Author

Pooja K Strope

National Institutes of Health

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Bioinformatics· 1

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:genome assembly· 1 Organism:multiple species· 1 Approach:simulation· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander Astashyn· 1 shared Brian J. Smith-White· 1 shared Deacon Sweeney· 1 shared Emily W. DavisiD· 1 shared Eric S. TvedteiD· 1 shared Eyal Mozes· 1 shared Karen ClarkiD· 1 shared Kim D. PruittiD· 1 shared

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2024-2024 · peak 1/yr

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1 shared paperBioinformatics

Alexander Astashyn

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1 paper

Recent·Most cited

Rapid and sensitive detection of genome contamination at scale with FCS-GX

Alexander Astashyn, Eric S. Tvedte, Deacon Sweeney, Victor Sapojnikov, Nathan Bouk, Victor Joukov, Eyal Mozes, Pooja K Strope, Pape M. Sylla, Lukas Wagner, Shelby L. Bidwell, Larissa C. Brown, Karen Clark, Emily W. Davis, Brian J. Smith-White, , Terence D. Murphy

FCS-GX, a hashed k-mer cross-species aligner with a 709 Gbp curated database, screens most genomes in 0.1-10 minutes and flagged 36.8 Gbp of contamination in GenBank.

Genome biology · Feb 26, 2024Peer-reviewedBioinformatics✦ In-depth digest