Author

Victor Joukov

National Institutes of Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:software / tool· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:multiple species· 1 Assay:protein sequence· 1

Frequent Co-Authors

Alexander Astashyn· 1 shared Brian J. Smith-White· 1 shared Camacho ChristiamiD· 1 shared Deacon Sweeney· 1 shared Emily W. DavisiD· 1 shared Eric S. TvedteiD· 1 shared Eyal Mozes· 1 shared Grzegorz M. Boratyn· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Alexander Astashyn

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Author profile →

2 papers

Recent·Most cited

Rapid and sensitive detection of genome contamination at scale with FCS-GX

Alexander Astashyn, Eric S. Tvedte, Deacon Sweeney, Victor Sapojnikov, Nathan Bouk, Victor Joukov, Eyal Mozes, Pooja K Strope, Pape M. Sylla, Lukas Wagner, Shelby L. Bidwell, Larissa C. Brown, Karen Clark, Emily W. Davis, Brian J. Smith-White, , Terence D. Murphy

FCS-GX, a hashed k-mer cross-species aligner with a 709 Gbp curated database, screens most genomes in 0.1-10 minutes and flagged 36.8 Gbp of contamination in GenBank.

Genome biology · Feb 26, 2024Peer-reviewedBioinformatics✦ In-depth digest

ElasticBLAST: Accelerating Sequence Search via Cloud Computing

Camacho Christiam, Grzegorz M. Boratyn, Victor Joukov, Roberto Vera Alvarez, Thomas Madden

ElasticBLAST performs BLAST sequence alignments in the cloud, handling multiple queries and reducing costs through cloud-native tools.

BMC Bioinformatics · Mar 26, 2023Peer-reviewedBioinformatics