Author

Qiuqin Wu

Brandeis University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genetics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:DNA methylation· 2 Approach:experimental assay· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:yeast· 2 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1

Frequent Co-Authors

James E. HaberiD· 2 shared Neal SugawaraiD· 2 shared Rameen BeroukhimiD· 2 shared Simona DaliniD· 2 shared Sophie WebsteriD· 2 shared Tracy Cui· 2 shared Victoria Liang· 2 shared Bingqiang LiuiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetics

James E. HaberORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

SLECA: a single-cell atlas of systemic lupus erythematosus enabling rare cell discovery using graph transformer

Maoteng Duan, Yao Shi, Hao Tian, Qiuqin Wu, Xiaoying Wang, Bingqiang Liu

SLECA creates a single-cell atlas of SLE to identify rare cell types, finding expanded double-negative T cells linked to disease severity and showing potential for therapeutic reprogramming.

Computational and Structural Biotechnology Journal · Mar 1, 2026Peer-reviewedBioinformatics

Mutations and structural variants arising during double-strand break repair

Simona Dalin, Sophie Webster, Neal Sugawara, Qiuqin Wu, S. Zhang, Carmen Macias, Elena Sapède, Tracy Cui, Victoria Liang, Laura Tran, Rameen Beroukhim, James E. Haber

The paper studies mutations and structural variants during double-strand break repair in budding yeast, finding that repair-associated deletions and template switches depend on microhomology and homeology.

Proceedings of the National Academy of Sciences · Feb 4, 2026Peer-reviewedGenetics

Double-strand break repair-associated intragenic deletions and tandem duplications suggest the architecture of the repair replication fork

Simona Dalin, Sophie Webster, Neal Sugawara, Shu Zhang, Qiuqin Wu, Tracy Cui, Victoria Liang, Rameen Beroukhim, James E. Haber

The paper investigates mutation patterns during double-strand break repair in yeast, finding that deletions and tandem duplications occur with specific microhomology preferences and structural constraints.

bioRxiv · Oct 9, 2023 · PreprintGenetics