Author

R. Koebnik

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Plant Biology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Research Focus:cell type annotation· 5 Organism:bacteria (other)· 4 Assay:bulk RNA-seq· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:variant calling· 2

Frequent Co-Authors

S. Cunnac· 5 shared B. Szurek· 4 shared V. Roman-Reyna· 3 shared C. Bragard· 2 shared J. E. Leach· 2 shared J. M. Jacobs· 2 shared L. Gagnevin· 2 shared M. Hutin· 2 shared

Activity by Year

2018-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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5 shared papersMicrobiology

S. Cunnac

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Comparative transcriptomics reveal a highly polymorphic Xanthomonas HrpG virulence regulon

T. Quiroz Monnens, B. Roux, S. Cunnac, E. Charbit, S. Carrere, E. Lauber, M.-F. Jardinaud, A. Darrasse, M. Arlat, B. Szurek, O. Pruvost, M.-A. Jacques, L. Gagnevin, R. Koebnik, L. D. Noël, A. Boulanger

This study uses transcriptomics to compare the HrpG regulon across 17 Xanthomonas strains, revealing diverse gene regulation beyond the T3SS and T3Es.

bioRxiv · May 17, 2024 · PreprintMicrobiology

High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences

F. Goettelmann, R. Koebnik, V. Roman-Reyna, B. Studer, R. Koelliker

This study presents complete genome sequences of four Xanthomonas translucens pv. graminis strains, revealing high genomic plasticity and unique features associated with pathogenicity.

bioRxiv · Jun 29, 2023Plant Biology

Novel genetic traits in Xanthomonas unveiled by the complete genome sequencing of three clade-1 xanthomonads

C. Peduzzi, A. Sagia, D. Burokiene, I. Katalin Nagy, M. Fischer-Le Saux, P. Portier, A. Dereeper, S. Cunnac, V. Roman-Reyna, J. M. Jacobs, C. Bragard, R. Koebnik

This study sequenced three novel clade-1 xanthomonads using long-read sequencing, revealing unique genetic traits and potential pathogenic mechanisms.

bioRxiv · Oct 10, 2022Microbiology

Repeated gain and loss of a single gene modulates the evolution of vascular pathogen lifestyles

E. Gluck-Thaler, A. Cerutti, A. Perez Quintero, J. Butchacas, V. Roman-Reyna, V. Narayanan Madhaven, D. Shantharaj, M. V. Merfa, C. Pesce, A. Jauneau, J. M. Lang, C. Allen, V. Verdier, L. Gagnevin, B. Szurek, , J. M. Jacobs

The paper shows that the gene cbsA acts as a switch for vascular vs. non-vascular pathogenesis in bacteria, with its presence and absence linked to lifestyle evolution.

bioRxiv · Apr 24, 2020Microbiology

A diagnostic multiplex PCR scheme for identification of plant-associated bacteria of the genus Pantoea

K. Kini, R. Agnimonhan, R. Dossa, D. Silue, R. Koebnik

The paper develops a multiplex PCR method to identify three major plant-pathogenic Pantoea species and other Pantoea strains from rice samples.

bioRxiv · Oct 30, 2018Microbiology

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice

T. T. Tran, A. L. Perez-Quintero, I. Wonni, S. C. D. Carpenter, Y. Yu, L. Wang, J. E. Leach, V. Verdier, S. Cunnac, A. J. Bogdanove, R. Koebnik, M. Hutin, B. Szurek

The paper identifies a new susceptibility gene in rice by analyzing TAL effector repertoires and their functional roles in bacterial leaf blight.

bioRxiv · Feb 8, 2018Plant Biology

Efficient enrichment cloning of TAL effector genes from Xanthomonas

T. T. Tran, H. Doucoure, M. Hutin, B. Szurek, S. Cunnac, R. Koebnik

The paper develops an efficient method to clone TAL effector genes from Xanthomonas by optimizing restriction digestions and size fractionation.

bioRxiv · Jan 30, 2018Microbiology