Author

A. Clum

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 4 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Assay:metagenomics· 4 Research Focus:cell type annotation· 2 Research Focus:ecology & biodiversity· 2 Organism:plant (other)· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

S. Roux· 4 shared C. Daum· 3 shared A. Copeland· 2 shared B. Foster· 2 shared E. A. Eloe-Fadrosh· 2 shared E. Eloe-Fadrosh· 2 shared M. Maymon· 2 shared N. Varghese· 2 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersMicrobiology

S. Roux

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A standardized quantitative analysis strategy for stable isotope probing metagenomics

D. Vyshenska, P. Sampara, K. Singh, A. Tomatsu, W. B. Kauffman, E. Nuccio, S. J. Blazewicz, J. Pett-Ridge, N. Varghese, M. Kellom, A. Clum, R. Riley, S. Roux, E. A. Eloe-Fadrosh, R. M. Ziels, R. R. Malmstrom

This paper introduces a standardized analysis framework and R package for quantifying isotopic enrichment in SIP metagenomics to identify active microbial genomes.

bioRxiv · Dec 20, 2022Microbiology

Genetic determinants of endophytism in the Arabidopsis root mycobiome

F. Mesny, S. Miyauchi, T. Thiergart, B. Pickel, L. Atanasova, M. Karlsson, B. Hüttel, K. W. Barry, S. Haridas, C. Chen, D. Bauer, W. Andreopoulos, J. Pangilinan, K. LaButti, R. Riley, , S. Hacquard

The paper identifies genetic factors associated with endophytism in Arabidopsis root fungi, showing specific gene families linked to aggressive colonization and plant health.

bioRxiv · Apr 28, 2021Microbiology

Metagenomes from the Loxahatchee wildlife refuge in the Florida Everglades

J. B. Benskin, D. A. Alvarez, N. A. Cadavid, C. A. Childs, M. F. Cupelli, L. A. De, A. M. Diaz, S. A. Eldridge, Y. B. Elhabashy, A. E. Fleming, N. A. Fox, M. Franco, J. C. Gaspari, I. M. Gerstin, K. A. Gibson, , E. Eloe-Fadrosh

The paper analyzes metagenomes from sediment samples in the Florida Everglades to characterize microbial and viral communities, their taxonomic composition, and functional potential, revealing correlations between environmental factors and gene frequencies.

bioRxiv · Feb 16, 2021 · PreprintMicrobiology

Isolation of potential plant growth-promoting bacteria from nodules of legumes grown in arid Botswana soil

M. A. Kosty, F. Pule-Meulenberg, E. A. Humm, P. Martinez-Hidalgo, M. Maymon, S. Mohammadi, J. Cary, P. Yang, K. Reddi, M. Huntemann, A. Clum, B. Foster, B. Foster, S. Roux, K. Palaniappan, , A. M. Hirsch

The paper isolates plant growth-promoting bacteria from legume nodules in Botswana soils, identifying drought-tolerant species and noting differences in microbial composition between soil and nodule microbiomes.

bioRxiv · Sep 2, 2020 · PreprintMicrobiology

Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress

A. Hirsch, S. Mukhtar, N. Khan, K. Malik, E. Humm, M. Pellegrini, B. Shi, L. Briscoe, M. Hunteman, A. Clum, B. Foster, B. Foster, S. Roux, K. Palanlappan, N. Varghese, , S. Mehnaz

The paper examines how soil salinity affects cowpea nodule microbiomes and identifies halotolerant PGPR strains that enhance plant growth under salinity stress.

bioRxiv · Nov 27, 2019Plant Biology