Author

S. Atashgahi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:metagenomics· 4 Research Focus:cell type annotation· 3 Research Focus:ecology & biodiversity· 2 Assay:bulk RNA-seq· 1 Approach:genetic perturbation / CRISPR· 1 Approach:statistical model· 1

Frequent Co-Authors

H. Smidt· 6 shared T. N. P. Bosma· 3 shared B. Nijsse· 2 shared C. Zhang· 2 shared D. Sipkema· 2 shared P. Peng· 2 shared Y. Lu· 2 shared A. Aldas-Vargas· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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6 shared papersMicrobiology

H. Smidt

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Organohalide respiration by a Desulforhopalus-dominated community

C. Zhang, S. Atashgahi, T. N. P. Bosma, H. Smidt

The paper isolates a Desulforhopalus-dominated community capable of debromination of 2,6-dibromophenol and identifies RDase genes in multiple bins, revealing their ecological roles and potential for bioremediation.

bioRxiv · Apr 18, 2023 · PreprintMicrobiology

Genome-resolved transcriptomics reveals novel organohalide-respiring bacteria from Aarhus Bay sediments

C. Zhang, T. N. P. Bosma, S. Atashgahi, H. Smidt

This study identifies novel organohalide-respiring bacteria from Aarhus Bay sediments using genome-resolved transcriptomics, revealing new reductive dehalogenase genes and regulatory mechanisms.

bioRxiv · Apr 17, 2023 · PreprintMicrobiology

Biodiversity and niche partitioning in an anaerobic benzene degrading culture

C. Melkonian, L. Fillinger, S. Atashgahi, U. Nunes da Rocha, E. Kuiper, B. Olivier, M. Braster, W. Gottstein, R. Helmus, J. Parsons, H. Smidt, M. van der Waals, J. Gerritse, B. W. Brandt, D. Molenaar, R. van Spanning

The paper investigates biodiversity and niche partitioning in a 15-year-old anaerobic benzene-degrading bioreactor, showing that species interactions maintain high diversity through trophic levels.

bioRxiv · Jul 17, 2020Ecology

Organohalide-respiring Desulfoluna species isolated from marine environments

P. Peng, T. Goris, Y. Lu, B. Nijsse, A. Burrichter, D. Schleheck, J. J. Koehorst, J. Liu, D. Sipkema, J. S. S. Damste, A. J. M. Stams, M. M. Haggblom, H. Smidt, S. Atashgahi

This paper isolates a third Desulfoluna strain capable of organohalide respiration and characterizes its genetic and metabolic capabilities for dehalogenation.

The ISME Journal · Jan 2, 2020Peer-reviewedMicrobiology

Metagenomic- and cultivation-based exploration of anaerobic chloroform biotransformation in hypersaline sediments as natural source of chloromethanes

P. Peng, Y. Lu, T. N. P. Bosma, I. Nijenhuis, B. Nijsse, S. A. Shetty, A. Ruecker, A. Umanetc, J. Ramiro-Garcia, A. Kappler, D. Sipkema, H. Smidt, S. Atashgahi

The paper investigates chloroform biotransformation in hypersaline sediments using cultivation and metagenomic approaches, finding that Clostridiales likely mediate CF to DCM and CO2 conversion.

bioRxiv · Nov 29, 2019Microbiology

Exploring groundwater microbial communities for natural attenuation potential of micropollutants

A. Aldas-Vargas, E. Hauptfeld, G. Hermes, S. Atashgahi, H. Smidt, H. H. M. Rijnaarts, N. B. Sutton

This study examines groundwater microbial communities in relation to geochemistry and pesticide presence to assess natural attenuation potential of micropollutants.

bioRxiv · Nov 21, 2019 · PreprintMicrobiology