Author

S. J. Burgess

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Scientific Communication & Education· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Assay:ChIP-seq· 2 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2

Frequent Co-Authors

A. Ibrahim· 2 shared A. W. Bisson Filho· 2 shared C. T. Smith· 2 shared I. Reyna-Llorens· 2 shared J. M. Hibberd· 2 shared K. Clark· 2 shared N. M. Niemi· 2 shared S. R. Stevenson· 2 shared

Activity by Year

2016-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersScientific Communication & Education

A. Ibrahim

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Author profile →

7 papers

Recent·Most cited

Insights from a survey of mentorship experiences by graduate and postdoctoral researchers

S. Sarabipour, N. M. Niemi, S. J. Burgess, C. T. Smith, A. W. Bisson Filho, A. Ibrahim, K. Clark

This study surveys graduate and postdoctoral researchers to assess mentorship quality, finding dissatisfaction in 25-45% of respondents and identifying common issues and strategies to improve mentorship.

bioRxiv · May 5, 2023 · PreprintScientific Communication & Education

The faculty-to-faculty mentorship experience: a survey on challenges and recommendations for improvements

S. Sarabipour, N. M. Niemi, S. J. Burgess, C. T. Smith, A. W. Bisson Filho, A. Ibrahim, K. Clark

This study surveys early- and mid-career faculty to assess mentorship experiences, identifying challenges and recommending improvements for faculty mentorship programs.

bioRxiv · Oct 17, 2022Scientific Communication & Education

Comparing quality of reporting between preprints and peer-reviewed articles in the biomedical literature

C. F. D. Carneiro, V. G. S. Queiroz, T. C. Moulin, C. A. M. Carvalho, C. B. Haas, D. Rayee, D. E. Henshall, E. A. De-Souza, F. E. Amorim, F. Z. Boos, G. D. Guercio, I. R. Costa, K. L. Hajdu, L. van Egmond, M. Modrak, , O. B. Amaral

This study compares reporting quality between preprints and peer-reviewed articles, finding peer-reviewed articles have slightly better reporting quality but preprints are still valid scientific contributions.

bioRxiv · Oct 8, 2020Scientific Communication & Education

Variation in relaxation of non-photochemical quenching in a soybean nested association mapping panel as a potential source for breeding improved photosynthesis

S. J. Burgess, E. M. de Becker, S. Cullum, I. Causon, I. Floristeanu, K. X. Chan, C. Moore, B. W. Diers, S. P. Long

The paper measures NPQ relaxation variation in a soybean NAM panel to assess its potential for improving photosynthesis through breeding.

bioRxiv · Jul 29, 2020 · PreprintPlant Biology

A bipartite transcription factor module controlling expression in the bundle sheath of Arabidopsis thaliana

P. J. Dickinson, J. Knerova, M. Szecowka, S. R. Stevenson, S. J. Burgess, H. Mulvey, A.-M. Bagman, A. Gaudinier, S. M. Brady, J. M. Hibberd

The paper identifies cis-elements and transcription factors regulating gene expression in the bundle sheath of Arabidopsis thaliana, providing insights into C4 photosynthesis evolution.

bioRxiv · Jul 6, 2020Plant Biology

Genome-wide transcription factor binding in leaves from C3 and C4 grasses

S. J. Burgess, I. Reyna-Llorens, S. R. Stevenson, P. Singh, K. Jaeger, J. M. Hibberd

The paper identifies genome-wide transcription factor binding in leaves of C3 and C4 grasses using DNaseI-SEQ, revealing conserved sites and shared mechanisms in C4 photosynthesis gene regulation.

bioRxiv · Jun 5, 2019Plant Biology

Ancient coding sequences underpin the spatial patterning of gene expression in C4 leaves

I. Reyna-Llorens, S. J. Burgess, B. P. Williams, S. Stanley, C. Boursnell, Julian M Hibberd

The paper identifies two conserved DNA motifs in exons that control spatial gene expression in C4 leaves, showing they are ancient and functionally important for C4 photosynthesis.

bioRxiv · Dec 6, 2016Plant Biology