Author

S. Kandels

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Microbiology· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 5 Approach:statistical model· 4 Research Focus:cell type annotation· 3 Research Focus:clustering· 2 Organism:human· 2 Research Focus:ecology & biodiversity· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

P. Bork· 5 shared C. Bowler· 3 shared E. Karsenti· 3 shared J. Poulain· 3 shared K. Labadie· 3 shared M. B. Sullivan· 3 shared N. Henry· 3 shared S. Pesant· 3 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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5 shared papersEcology

P. Bork

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Global observation of plankton communities from space

H. Kaneko, H. Endo, N. Henry, C. Berney, F. Mahe, J. Poulain, K. Labadie, O. Beluche, R. El Hourany, Tara Oceans Coordinators, S. Chaffron, P. Wincker, R. Nakamura, L. Karp-Boss, E. Boss, , S. Sunagawa

The paper uses satellite data and machine learning to predict global plankton community distributions with 67% accuracy, outperforming temperature and chlorophyll a alone.

bioRxiv · Sep 23, 2022 · PreprintEcology

C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants

P. Ferretti, J. Wirbel, O. M. Maistrenko, T. Van Rossum, R. Alves, A. Fullam, W. Akanni, C. Schudoma, A. Schwarz, R. Thielemann, L. Thomas, S. Kandels, R. Hercog, A. Telzerow, I. Letunic, , P. Bork

This study finds that C. difficile is often overdiagnosed in adults and is a common commensal in infants, with distinct microbial associations across age groups.

bioRxiv · Feb 16, 2022 · PreprintMicrobiology

Drivers and Determinants of Strain Dynamics Following Faecal Microbiota Transplantation

T. S. Schmidt, S. S. Li, O. M. Maistrenko, W. Akkani, L. P. Coelho, S. Dolai, A. Fullam, A. Glazek, R. Hercog, H. Herrema, F. Jung, S. Kandels, A. Orakov, T. Van Rossum, V. Benes, , P. Bork

This study identifies recipient and donor microbiome factors that determine strain dynamics after FMT, independent of clinical outcomes.

bioRxiv · Sep 30, 2021Microbiology

Ocean-wide comparisons of mesopelagic planktonic community structures

J. Rigonato, M. Budinich, A. A. Murillo, M. C. Brandao, J. J. Pierella Karlusich, Y. D. Soviadan, A. C. Gregory, H. Endo, F. Kokoszka, D. Vik, N. Henry, P. Fremont, K. Labadie, A. A. Zayed, C. Dimier, , O. Jaillon

This study compares mesopelagic planktonic community structures across different oxygen conditions and identifies environmental drivers and community modules.

bioRxiv · Feb 26, 2021Ecology

Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

D. J. Richter, R. Watteaux, T. Vannier, J. Leconte, P. Fremont, G. Reygondeau, N. Maillet, N. Henry, G. Benoit, O. Da Silva, T. O. Delmont, A. Fernandez-Guerra, S. Suweis, R. Narci, C. Berney, , P. Peterlongo

The paper analyzes plankton genomic distribution across oceans to show how large-scale currents shape biogeography, revealing size-dependent patterns and basin-scale transport effects.

bioRxiv · Dec 24, 2020Ecology