Author

S. Shoaie

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2 Animal Behavior & Cognition· 1 Physiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

E. Witherden· 2 shared S. Lee· 2 shared A. Habtesion· 1 shared A. Harzandi· 1 shared A. Mardinoglu· 1 shared A. Phillips· 1 shared A. Zamalloa· 1 shared B. Arefaine· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersPhysiology

E. Witherden

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Impact of Yaq-001, a non-absorbable, engineered carbon bead of controlled porosity in rodent models of cirrhosis and acute on chronic liver failure

J. Liu, J. Macnaughtan, Y. Jin, F. Clasen, A. Habtesion, A. Phillips, F. De Chiara, G. Ingavle, P. Cordero-Sanchez, J. Soeda, J. A. Oben, J. Li, H. Wu, L. Ann Edwards, I. J. Cox, , R. Jalan

This study evaluates Yaq-001, a non-absorbable carbon bead, in rodent cirrhosis and ACLF models, showing improvements in inflammation, liver function, and microbiome composition.

bioRxiv · Aug 15, 2023 · PreprintAnimal Behavior & Cognition

Pathogenic entero- and salivatypes harbour changes in microbiome virulence and antimicrobial resistance genes with increasing chronic liver disease severity

S. Lee, B. Arefaine, N. Begum, M. Stamouli, E. Witherden, M. Mohamad, A. Harzandi, A. Zamalloa, H. Cai, L. A. Edwards, R. Williams, S. Chokshi, A. Mardinoglu, G. Proctor, D. L. Shawcross, , V. C. Patel

The paper identifies changes in oral and gut microbiome virulence and antimicrobial resistance genes associated with increasing severity of chronic liver disease.

bioRxiv · Aug 6, 2023 · PreprintPhysiology

Comparative genomics analysis of Chryseobacterium sp. KMC2 reveals metabolic pathways involved in keratinous utilization and natural product biosynthesis

D. Kang, S. Shoaie, S. Jacquiod, S. J. Sorensen, R. Ledesma-Amaro

This study uses comparative genomics to analyze Chryseobacterium sp. KMC2 and identifies secondary metabolite gene clusters and metabolic pathways involved in keratin utilization and natural product biosynthesis.

bioRxiv · Feb 23, 2021 · PreprintMicrobiology

Abundance and diversity of resistomes differ between healthy human oral cavities and gut

V. R. Carr, E. Witherden, S. Lee, S. Shoaie, P. Mullany, G. B. Proctor, D. Gomez-Cabrero, D. L. Moyes

This study compares antimicrobial resistance gene abundance and diversity in human oral cavities and gut samples globally, finding distinct resistome profiles and lower oral diversity.

bioRxiv · Sep 19, 2019Microbiology