Author

S. Tringe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 8 Ecology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 8 Approach:statistical model· 5 Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Organism:plant (other)· 3 Research Focus:ecology & biodiversity· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

C. COLEINE· 4 shared C. Donati· 4 shared D. Albanese· 4 shared J. E. Stajich· 4 shared C. Pennacchio· 3 shared L. Selbmann· 3 shared S. Roux· 3 shared A. M. Sheflin· 2 shared

Activity by Year

2019-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersMicrobiology

C. COLEINE

Mutual co-authors in cluster

Author profile →

9 papers

Recent·Most cited

Metagenomics untangles metabolic adaptations of Antarctic endolithic 1 bacteria at the fringe of habitability

C. COLEINE, D. Albanese, A. Ray, M. DELGADO BAQUERIZO, J. E. Stajich, T. Williams, S. Larsen, S. Tringe, C. Pennacchio, B. C. Ferrari, C. Donati, L. Selbmann

The paper analyzes metagenomic data from Antarctic endolithic microbiomes to identify metabolic strategies supporting life at extreme environmental limits.

bioRxiv · Jul 30, 2023 · PreprintMicrobiology

Root associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum

Y. N. Chai, Y. Qi, E. Goren, A. M. Sheflin, S. Tringe, J. E. Prenni, P. Liu, D. P. Schachtman

This study links root-associated bacterial communities and root metabolite composition to nitrogen use efficiency in sorghum under different nitrogen conditions.

bioRxiv · Feb 8, 2023Microbiology

Highly diverse and unknown viruses may enhance Antarctic endoliths' adaptability

C. L. Ettinger, M. Saunders, L. L. Selbmann, M. Delgado-Baquerizo, C. Donati, D. Albanese, S. Roux, S. Tringe, C. Pennacchio, T. G. del Rio, J. E. Stajich, C. Coleine

The paper analyzes viral diversity in Antarctic rocks using metagenomics, revealing highly diverse and spatially structured virus communities that may influence bacterial adaptation and biogeochemistry.

bioRxiv · Dec 2, 2022Microbiology

Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

E. Goren, C. Wang, Z. He, A. M. Sheflin, D. Chiniquy, J. E. Prenni, S. Tringe, D. P. Schachtman, P. Liu

This paper introduces a method to identify microbiome features affecting outcomes while controlling for confounding variables, showing improved accuracy in agricultural microbiome studies.

bioRxiv · Aug 9, 2020Microbiology

Metagenome-assembled genomes of phytoplankton communities across the Arctic Circle

A. Duncan, K. Barry, C. Daum, E. Eloe-Fadrosh, S. Roux, S. Tringe, K. Schmidt, K. U. Valentin, N. Varghese, I. V. Grigoriev, R. M. Leggett, V. Moulton, T. Mock

This study assembles metagenome-assembled genomes (MAGs) from Arctic and non-polar phytoplankton communities to compare their genetic diversity and functional differences.

bioRxiv · Jun 16, 2020 · PreprintMicrobiology

Antarctic cryptoendolithic bacterial lineages of pre-Cambrian origin as proxy for Mars colonization

D. Albanese, C. Coleine, O. Rota-Stabelli, S. Onofri, S. Tringe, J. E. Stajich, L. Selbmann, C. Donati

The paper analyzes Antarctic cryptoendolithic bacterial communities to explore their evolutionary origins and potential as analogs for Martian life.

bioRxiv · Feb 27, 2020Microbiology

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

L. H. Hagen, C. G. Brooke, C. Shaw, A. D. Norbeck, H. Piao, M. O. Arntzen, H. Brewer, A. Copeland, N. Isern, A. Shukla, S. Roux, V. Lombard, B. Henrissat, M. O'Malley, I. V. Grigoriev, , M. Hess

This study identifies fungal-specific carbohydrate-active enzymes involved in rumen fiber degradation, highlighting their role in complementing bacterial cellulolytic activity.

bioRxiv · Jan 16, 2020Microbiology

Metagenomes in the borderline ecosystems of the Antarctic cryptoendolithic communities

C. Coleine, D. Albanese, S. Onofri, S. Tringe, C. Pennacchio, C. Donati, J. E. Stajich, L. Selbmann

The paper presents the first shotgun metagenomes of Antarctic cryptoendolithic lichen-dominated communities from 18 rock samples, providing raw data and initial analysis of microbial diversity and function.

bioRxiv · Aug 5, 2019Microbiology

Niche differentiation is spatially and temporally regulated in the rhizosphere

E. E. Nuccio, E. Starr, U. Karaoz, E. L. Brodie, J. Zhou, S. Tringe, R. R. Malmstrom, T. Woyke, J. F. Banfield, M. K. Firestone, J. Pett-Ridge

This study identifies four microbial guilds in the rhizosphere and detritusphere of Avena fatua, showing niche differentiation drives carbohydrate depolymerization and soil carbon cycling.

bioRxiv · Apr 18, 2019Ecology