Author

E. L. Brodie

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 10 Ecology· 3 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 8 Approach:statistical model· 8 Research Focus:host-pathogen & immune response· 5 Research Focus:cell type annotation· 4 Approach:experimental assay· 4 Assay:metabolomics· 4 Organism:bacteria (other)· 2 Research Focus:cell-cell communication· 2

Frequent Co-Authors

U. Karaoz· 6 shared J. Pett-Ridge· 4 shared A. A. Malik· 2 shared E. E. Nuccio· 2 shared G. L. Marschmann· 2 shared J. B. Martiny· 2 shared K. Zhalnina· 2 shared M. K. Firestone· 2 shared

Activity by Year

2018-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

6 shared papersMicrobiology

U. Karaoz

Mutual co-authors in cluster

Author profile →

14 papers

Recent·Most cited

Phylogenetic distribution and experimental characterization of corrinoid production and dependence in soil bacterial isolates

Z. I. Alvarez-Aponte, A. M. Govindaraju, Z. F. F. Hallberg, A. M. Nicolas, M. A. Green, K. C. Mok, C. Fonseca-Garcia, D. Coleman-Derr, E. L. Brodie, H. K. Carlson, M. E. Taga

The paper investigates corrinoid production and dependence in soil bacteria to understand metabolic interactions, finding metabolic compatibility and conserved traits across genera.

bioRxiv · Dec 21, 2023Microbiology

Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem

c. coclet, P. O. Sorensen, U. Karaoz, S. Wang, E. L. Brodie, E. A. A. Eloe-Fadrosh, S. Roux

This study examines viral diversity and activity in a high-altitude watershed soil ecosystem, revealing seasonal shifts in phage activity and virus-host dynamics linked to environmental and host factors.

bioRxiv · Mar 6, 2023Microbiology

Influence of root cortical aerenchyma on the rhizosphere microbiome of field-grown maize

T. Galindo-Castaneda, C. M. Rojas Alvarado, U. Karaoz, E. L. Brodie, K. Brown, J. Lynch

This study investigates how root cortical aerenchyma (RCA) affects rhizosphere microbial communities in maize, finding RCA explains more variance in microbial composition in South Africa than genotype.

bioRxiv · Jan 31, 2023 · PreprintPlant Biology

Life history strategies and niches of soil bacteria emerge from interacting thermodynamic, biophysical, and metabolic traits

G. L. Marschmann, J. Tang, K. Zhalnina, U. Karaoz, H. Cho, B. Le, J. Pett-Ridge, E. L. Brodie

The paper predicts life history traits of soil bacteria based on thermodynamic, biophysical, and metabolic traits, showing growth efficiency becomes more important later in plant growth.

bioRxiv · Jun 29, 2022Ecology

Metabolic traits and the niche of bulk soil bacteria in a Mediterranean grassland

K. Zhalnina, R. A. White, M. de Raad, K. Deng, C. D. Nicora, U. Karaoz, J. Pett-Ridge, M. Firestone, M. S. Lipton, T. Northen, E. L. Brodie

This study compares metabolic traits of bulk soil and rhizosphere bacteria in a Mediterranean grassland, finding bulk soil bacteria better adapted to degrade plant polymers.

bioRxiv · Jun 21, 2022 · PreprintMicrobiology

A gut commensal niche regulates stable association of a multispecies microbiota

R. Dodge, E. W. Jones, H. Zhu, B. Obadia, D. J. Martinez, C. Wang, A. Aranda-Diaz, K. Aumiller, Z. Liu, M. Voltolini, E. L. Brodie, K. C. Huang, J. M. Carlson, D. A. Sivak, A. C. Spradling, W. B. Ludington

The study identifies a strain-specific bacterial niche in the Drosophila foregut that stabilizes microbiota composition through spatial and competitive interactions.

bioRxiv · Sep 30, 2021Microbiology

Kinetic Properties of Microbial Exoenzymes Vary with Soil Depth but Have Similar Temperature Sensitivities Through the Soil Profile

R. J. E. Alves, I. A. Callejas, G. L. Marschmann, M. Mooshammer, H. W. Singh, B. Whitney, M. S. Torn, E. L. Brodie

The paper examines how microbial exoenzyme kinetics and temperature sensitivity vary with soil depth, finding depth-dependent changes in enzyme properties but similar temperature responses across depths.

bioRxiv · Jul 2, 2021Microbiology

Measurement of Volatile Compounds for Real-time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt

J. Kim, A. H. Goldstein, R. Chakraborty, K. J. Jardine, R. Weber, P. O. Sorensen, S. Wang, B. Faybishenko, P. Misztal, E. L. Brodie

This study uses PTR-TOF-MS to analyze microbial volatile compounds during simulated snowmelt, revealing metabolic responses and interactions in soil microbiomes.

bioRxiv · Mar 11, 2021Microbiology

Community RNA-Seq: Multi-kingdom responses to living versus decaying root inputs in soil

E. E. Nuccio, N. H. Nguyen, U. Nunes da Rocha, X. Mayali, J. Bougoure, P. Weber, E. L. Brodie, M. K. Firestone, J. Pett-Ridge

The paper uses community RNA-Seq to analyze multi-kingdom microbial responses to living and decaying root inputs in soil, finding shifts in microbial community composition and substrate preferences.

bioRxiv · Jan 12, 2021 · PreprintMicrobiology

Multiple lineages of Streptomyces produce antimicrobials within passalid beetle galleries across eastern North America

R. d. C. Pessotti, B. L. Hansen, J. N. Reaso, J. A. Ceja-Navarro, L. El-Hifnawi, E. L. Brodie, M. F. Traxler

The paper identifies multiple Streptomyces lineages and antimicrobials in the frass of passalid beetles, showing their role in pathogen inhibition.

bioRxiv · Dec 2, 2020 · PreprintMicrobiology

Sympatric and allopatric differentiation delineates population structure in free-living terrestrial bacteria

A. B. Chase, P. Arevalo, E. L. Brodie, M. F. Polz, U. Karaoz, J. B. H. Martiny

The paper examines genetic differentiation in free-living soil bacteria across a climate gradient, finding evidence for both isolation-by-environment and isolation-by-distance.

bioRxiv · Jun 17, 2019 · PreprintMicrobiology

Physiological adaptations of leaf litter microbial communities to long-term drought

A. A. Malik, T. Swenson, C. Weihe, E. Morrison, J. B. Martiny, E. L. Brodie, T. R. Northen, S. D. Allison

This study examines how microbial communities in leaf litter adapt to long-term drought through metatranscriptomic and metabolomic analyses in Californian grass and shrub ecosystems.

bioRxiv · May 8, 2019 · PreprintMicrobiology

Niche differentiation is spatially and temporally regulated in the rhizosphere

E. E. Nuccio, E. Starr, U. Karaoz, E. L. Brodie, J. Zhou, S. Tringe, R. R. Malmstrom, T. Woyke, J. F. Banfield, M. K. Firestone, J. Pett-Ridge

This study identifies four microbial guilds in the rhizosphere and detritusphere of Avena fatua, showing niche differentiation drives carbohydrate depolymerization and soil carbon cycling.

bioRxiv · Apr 18, 2019Ecology

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

A. A. Malik, J. B. Martiny, E. L. Brodie, A. C. Martiny, K. K. Treseder, S. D. Allison

The paper explores microbial strategies influencing soil carbon cycling under climate change and their implications for carbon stability.

bioRxiv · Oct 17, 2018Ecology