Author

Sam Wilkinson

Royal Brompton & Harefield NHS Foundation Trust

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Approach:deep learning· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:phylogenetics / evolution· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aine Niamh O’TooleiD· 1 shared Alicja Wilk· 1 shared Ana T. DugganiD· 1 shared Andrew RambautiD· 1 shared Catherine FrancisiD· 1 shared Chris KentiD· 1 shared Connor Chato· 1 shared Deborah J. Morris-RosendahliD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperEvolutionary Biology

Aine Niamh O’TooleORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Human outbreak detection and best practice MPXV analysis and interpretation with squirrel

Aine Niamh O’Toole, Eddy Kinganda-Lusamaki, Rachel Colquhoun, Connor Chato, Emily Scher, Chris Kent, Sam Wilkinson, Joshua Quick, Nicholas Loman, Ana T. Duggan, Placide Mbala, Andrew Rambaut

This paper introduces squirrel, a tool for analyzing MPXV genomes to detect outbreaks and classify APOBEC3 mutations, aiding public health responses.

Virus Evolution · Dec 10, 2025Peer-reviewedEvolutionary Biology

CardioClassifier: demonstrating the power of disease- and gene-specific computational decision support for clinical genome interpretation

Nicola Whiffin, Roddy Walsh, Risha Govind, Matthew Edwards, Mian Ahmad, Xiaolei Zhang, Upasana Tayal, Rachel J. Buchan, William Midwinter, Alicja Wilk, Hanna Najgebauer, Catherine Francis, Sam Wilkinson, Thomas Monk, Laura Brett, , Stuart A. Cook

CardioClassifier is a decision-support tool for inherited cardiac conditions that improves variant interpretation by integrating disease-specific annotations and case data.

Genetics in Medicine · Jan 25, 2018Peer-reviewedGenomics