Author

Shannon Kalsow

University of California, Irvine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:Drosophila· 2 Approach:experimental assay· 2 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Organism:mouse· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

J. J. EmersoniD· 2 shared Mahul ChakrabortyiD· 2 shared Anoja G. PereraiD· 1 shared Danny E. MilleriD· 1 shared Divya Gupta· 1 shared Edwin A. Solares· 1 shared Kate Hall· 1 shared Lior Zilberberg· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

J. J. EmersonORCID

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3 papers

Recent·Most cited

17 β-estradiol impedes aortic root dilation and rupture in male Marfan mice

Louis Saddic, Sean S. Escopete, Lior Zilberberg, Shannon Kalsow, Divya Gupta, Mansoureh Eghbali, Sarah J. Parker

This study shows that 17 β-estradiol reduces aortic root dilation and improves survival in Marfan male mice by inhibiting TNF-NF-κB signaling and preventing aortic smooth muscle cell inflammation.

International Journal of Molecular Sciences · Sep 1, 2023Peer-reviewedGenetics

Rapid low-cost assembly of the Drosophila melanogaster reference genome using low-coverage, long-read sequencing

Edwin A. Solares, Mahul Chakraborty, Danny E. Miller, Shannon Kalsow, Kate Hall, Anoja G. Perera, J. J. Emerson, R. Scott Hawley

The paper presents a low-cost method to assemble the Drosophila melanogaster reference genome using long-read sequencing and optical mapping, revealing structural variants and demonstrating cost-effective genome assembly.

G3 Genes Genomes Genetics · Jul 18, 2018Peer-reviewedGenomics

Extensive hidden genetic variation shapes the structure of functional elements in Drosophila

Mahul Chakraborty, Nicholas W. VanKuren, Roy Zhao, Xinwen Zhang, Shannon Kalsow, J. J. Emerson

The paper identifies extensive hidden genetic variation in Drosophila melanogaster by assembling a new reference genome and comparing it to the existing one, revealing structural variants linked to phenotypic traits.

Nature Genetics · Dec 15, 2017Peer-reviewedGenomics