Author

Shashi Badloe

Princess Máxima Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alex JanseiD· 2 shared Bastiaan B.J. TopsiD· 2 shared Douwe F. M. van der LeestiD· 2 shared Eugène T.P. VerwieliD· 2 shared Hindrik H. D. KerstensiD· 2 shared Jayne Y. Hehir‐KwaiD· 2 shared Patrick KemmereniD· 2 shared Casey CaiiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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2 shared papersGenomics

Alex JanseORCID

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2 papers

Recent·Most cited

Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS

Ianthe A. E. M. van Belzen, Casey Cai, Marc C van Tuil, Shashi Badloe, Eric Strengman, Alex Janse, Eugène T.P. Verwiel, Douwe F. M. van der Leest, Lennart A. Kester, Jan J. Molenaar, Jules P.P. Meijerink, Jarno Drost, Weng Chuan Peng, Hindrik H. D. Kerstens, Bastiaan B.J. Tops, , Jayne Y. Hehir‐Kwa

This paper develops a method to detect tumor-specific gene fusions in pediatric cancer by integrating RNA-seq and WGS, identifying 165 high-confidence fusions and their structural variants.

BMC Cancer · Jul 3, 2023Peer-reviewedGenomics

Trecode: a FAIR eco-system for the analysis and archiving of omics data in a combined diagnostic and research setting

Hindrik H. D. Kerstens, Jayne Y. Hehir‐Kwa, Ellen van de Geer, Chris van Run, Shashi Badloe, Alex Janse, John L. Baker-Hernandez, Sam de Vos, Douwe F. M. van der Leest, Eugène T.P. Verwiel, Bastiaan B.J. Tops, Patrick Kemmeren

Trecode provides a FAIR-compliant platform for managing and analyzing omics data in clinical and research settings, ensuring reproducibility and data reuse.

BioMedInformatics · Dec 23, 2022Peer-reviewedBioinformatics