Author

Shi Xu

Primary ORCID profile (0000-0002-2178-5666 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Shi XuiD1 paper · AbbVie (United States)

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:multiple species· 1 Assay:protein structure· 1

Frequent Co-Authors

Caiyi FeiiD· 2 shared Boran WangiD· 1 shared Fenglei Cui· 1 shared Hanchun YangiD· 1 shared Hu Dongmei· 1 shared Liangzhen ZhengiD· 1 shared Lifeng Zhang· 1 shared Lingming Kong· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersImmunology

Caiyi FeiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Pan-Prediction of MHC-II Restricted Epitopes Across Species via an Alphafold-based Quantification Scheme

Suqiu Wang, Lingming Kong, Hu Dongmei, Liangzhen Zheng, Caiyi Fei, Liubao Du, Ziche Tang, Malgorzata Anna Garstka, Onur Serçinoğlu, Lifeng Zhang, Sheng Wang, Shi Xu, Hanchun Yang, Nianzhi Zhang

This study introduces AF-pred, an Alphafold-based tool for cross-species prediction of MHC-II restricted epitopes, showing better performance for non-human MHC-II than sequence-based methods.

hLife · Jan 9, 2026Peer-reviewedImmunology

SAKit: an all-in-one analysis pipeline for identifying novel protein caused by variant events at genomic and transcriptic level

Yan Li, Boran Wang, Zengding Wu, Shi Xu, Fenglei Cui, Caiyi Fei, Qiang Sun

SAKit identifies novel proteins caused by genomic and transcriptomic variants using long-read sequencing, showing large-scale mutations contribute more to novel protein production than point mutations.

bioRxiv · Mar 6, 2023 · PreprintBioinformatics