Shiya Song

Ancestry Inference Using Reference Labeled Clusters of Haplotypes

ARCHes infers ancestry composition using haplotype-based models, outperforming RFMix in global and local ancestry assignment across diverse populations.

Ancient European dog genomes reveal continuity since the early Neolithic

This study sequenced ancient dog genomes from the Neolithic period in Europe, finding continuity with modern dogs and rejecting a population replacement model and dual origins hypothesis for dog domestication.

Modeling human population separation history using physically phased genomes

The paper uses physically phased genomes to infer human population separation history, finding earlier split times with statistical phasing compared to experimental phasing.

Inference of Gorilla demographic and selective history from whole genome sequence data

This study uses whole genome sequences from gorillas to infer demographic history and selective sweeps, finding population expansions and contractions and signatures of positive selection in specific biological processes.