Krishna R. Veeramah

The paper links genomic signatures of selection to differentially expressed genes in sticklebacks adapting to marine and freshwater environments, showing enrichment of adaptive SNPs in these genes.

The paper shows that a few individuals with large adaptive haploblocks drive rapid adaptation of anadromous sticklebacks to freshwater in multiple lakes.

The paper shows that a few individuals with large haploblocks of adaptive alleles drove rapid freshwater adaptation in Threespine Stickleback, with inbreeding reducing genetic load.

The paper examines genetic and cultural changes in post-Roman Europe, finding that cultural shifts in Slovenia occurred without corresponding genetic changes, indicating a decoupling of cultural and genetic dynamics.

The paper quantifies how gene flow and selection shape spatial genomic structure over time in Drosophila melanogaster, finding widespread homogenization and preservation of adaptive loci.

This study uses ancient DNA to analyze post-Roman polity formation in the Little Hungarian Plain, revealing genetic changes and social organization patterns.

The paper analyzes paleogenomic data from 5th-6th century Pannonia to reveal genetic diversity and migration patterns in post-Roman communities.

The paper benchmarks five Y-chromosomal haplogroup classifiers using whole-genome and whole-exome sequencing data, finding YLeaf performs best for both and handles third-generation sequencing data effectively.

The paper analyzes ancient genomes from the Mokrin necropolis to study kinship, population structure, and status inheritance in an Early Bronze Age community.

The paper analyzes mitochondrial DNA from Longobard-era cemeteries to study genetic continuity and admixture during medieval migrations in Europe.

The paper analyzes ancient genomic DNA from two cemeteries associated with the Longobards to study social organization and migration patterns in 6th-century Europe.

This study sequenced ancient dog genomes from the Neolithic period in Europe, finding continuity with modern dogs and rejecting a population replacement model and dual origins hypothesis for dog domestication.

ATLAS, a C++ toolkit that models post-mortem damage when genotyping ancient or low-depth BAM data, avoided GATK's reference bias and made fewer errors at higher depth in simulations.