Author

Soichiro Haruna

Research Institute for Microbial Diseases, The University of Osaka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:CITE-seq· 2 Organism:human· 2 Approach:machine learning (classical)· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Ayan Sengupta· 2 shared Daron M. StandleyiD· 2 shared Songling LiiD· 2 shared Debottam Upadhyaya· 1 shared Dianita S. SaputriiD· 1 shared Florian Hauer· 1 shared Guanqun SuniD· 1 shared Hendra Saputra IsmantoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Ayan Sengupta

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Accurate and scalable multi-disease classification from adaptive immune repertoires

Natnicha Jiravejchakul, Ayan Sengupta, Songling Li, Debottam Upadhyaya, Mara Anaís Llamas-Covarrubias, Florian Hauer, Soichiro Haruna, Daron M. Standley

This paper introduces FACTS, a scalable machine learning framework for multi-disease classification using TCR repertoires, achieving high accuracy and preserving biological signals.

bioRxiv · Aug 12, 2025 · PreprintBioinformatics

Robust diagnosis of infectious disease, autoimmunity and cancer from the paratope networks of adaptive immune receptors

Zichang Xu, Hendra Saputra Ismanto, Dianita S. Saputri, Soichiro Haruna, Guanqun Sun, Jan Wilamowski, Shunsuke Teraguchi, Ayan Sengupta, Songling Li, Daron M. Standley

This paper develops a novel representation of adaptive immune receptors to improve disease classification from blood samples, achieving higher accuracy for infectious disease, autoimmunity, and cancer.

bioRxiv · Nov 28, 2023 · PreprintBioinformatics