Author

Jan Wilamowski

Research Institute for Microbial Diseases, The University of OsakaORCID 0000-0002-8522-4825Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:CITE-seq· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Daron M. StandleyiD· 3 shared Shunsuke TeraguchiiD· 3 shared Zichang XuiD· 3 shared Hendra Saputra IsmantoiD· 2 shared Songling LiiD· 2 shared Ana DavilaiD· 1 shared Ayan Sengupta· 1 shared Dianita S. SaputriiD· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersBioinformatics

Daron M. StandleyORCID

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3 papers

Recent·Most cited

Robust diagnosis of infectious disease, autoimmunity and cancer from the paratope networks of adaptive immune receptors

Zichang Xu, Hendra Saputra Ismanto, Dianita S. Saputri, Soichiro Haruna, Guanqun Sun, Jan Wilamowski, Shunsuke Teraguchi, Ayan Sengupta, Songling Li, Daron M. Standley

This paper develops a novel representation of adaptive immune receptors to improve disease classification from blood samples, achieving higher accuracy for infectious disease, autoimmunity, and cancer.

bioRxiv · Nov 28, 2023 · PreprintBioinformatics

InterClone: Store, Search and Cluster Adaptive Immune Receptor Repertoires

Jan Wilamowski, Zichang Xu, Hendra Saputra Ismanto, Songling Li, Shunsuke Teraguchi, Mara Anaís Llamas-Covarrubias, Xiuyuan Lu, Sho Yamasaki, Daron M. Standley

InterClone stores, searches, and clusters adaptive immune receptor repertoires, demonstrating its utility in analyzing SARS-CoV-2 antibodies and TCRs from different donor groups.

bioRxiv · Jul 31, 2022 · PreprintBioinformatics

Improved antibody-specific epitope prediction using AlphaFold and AbAdapt

Zichang Xu, Ana Davila, Jan Wilamowski, Shunsuke Teraguchi, Daron M. Standley

This study improves epitope prediction by integrating AlphaFold with the AbAdapt pipeline, showing better prediction of antibody-specific epitope residues.

ChemBioChem · Jul 27, 2022Peer-reviewedBioinformatics