Author

T. Toivainen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

B. Panis· 1 shared B. S. Gaut· 1 shared C. Barbey· 1 shared C. Castillejo· 1 shared C. Martin-Pizarro· 1 shared D. Pose· 1 shared F. Van Nieuwerburgh· 1 shared H. De Kort· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperEvolutionary Biology

B. Panis

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3 papers

Recent·Most cited

Standing covariation between genomic and epigenomic patterns as source for natural selection in wild strawberry plants

H. De Kort, T. Toivainen, F. Van Nieuwerburgh, B. Panis, T. P. Hytonen, O. Honnay

This study shows that SNPs and DMCs in wild strawberries covary under drought stress, suggesting genomic redundancy and polygenic adaptation.

bioRxiv · Mar 31, 2021 · PreprintEvolutionary Biology

Allelic Variation of MYB10 is the Major Force Controlling Natural Variation of Skin and Flesh Color in Strawberry (Fragaria spp.) fruit

C. Castillejo, V. Waurich, H. Wagner, R. Ramos, N. Oiza, P. Munoz, J. C. Trivino, J. Caruana, Z. Liu, N. Cobo, M. A. Hardigan, S. J. Knapp, J. G. Vallarino, S. Osorio, C. Martin-Pizarro, , I. Amaya

This study identifies MYB10 allelic variation as the primary driver of natural color variation in strawberry fruit, with specific mutations affecting anthocyanin biosynthesis in both diploid and octoploid species.

bioRxiv · Jun 12, 2020Plant Biology

Evolutionary genomics of structural variation in Asian rice (Oryza sativa) and its wild progenitor (O. rufipogon)

Y. Kou, Y. Liao, T. Toivainen, Y. Lv, X. Tian, J. J. Emerson, B. S. Gaut, Y. Zhou

This study identifies structural variants in Asian rice and its wild ancestor, finding they are predominantly deleterious and contribute to domestication costs and agronomic trait changes.

bioRxiv · Dec 19, 2019Evolutionary Biology