Author

Thomas Anantharaman

BioNano Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Research Focus:variant calling· 3 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Organism:Drosophila· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Alex R. HastieiD· 2 shared Andy Wing Chun PangiD· 2 shared Ernest T. Lam· 2 shared Han CaoiD· 2 shared Joyce LeeiD· 2 shared Aaron M. WengeriD· 1 shared Adrian M. StütziD· 1 shared Ali BashiriD· 1 shared

Activity by Year

2013-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Alex R. HastieORCID

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Author profile →

4 papers

Recent·Most cited

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Mark Chaisson, Ashley D. Sanders, Xuefang Zhao, Ankit Malhotra, David Porubskỳ, Tobias Rausch, Eugene J. Gardner, Oscar L. Rodriguez, Li Guo, Ryan L. Collins, Xian Fan, Jia Wen, Robert E. Handsaker, Susan Fairley, Zev N. Kronenberg, , Charles Lee

This study identifies a large number of structural variants in human genomes using multiple sequencing technologies and presents them as a gold standard for future studies.

Nature Communications · Apr 16, 2019Peer-reviewedGenomics

Rapid Automated Large Structural Variation Detection in a Diploid Genome by NanoChannel Based Next-Generation Mapping

Alex R. Hastie, Ernest T. Lam, Andy Wing Chun Pang, Xinyue Zhang, Warren Andrews, Joyce Lee, Tiffany Y Liang, Jian Wang, Xiang Zhou, Zhanyang Zhu, Thomas Anantharaman, Željko Džakula, Sven Bocklandt, Urvashi Surti, Michael Saghbini, , Han Cao

The paper introduces a method to detect large structural variants in diploid genomes using Bionano Genomics next-generation mapping, achieving high resolution and throughput.

bioRxiv · Feb 14, 2017 · PreprintGenomics

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool

Jennifer Marie Shelton, Michelle C Coleman, Nic Herndon, Nanyan Lu, Ernest T Lam, Thomas Anantharaman, Palak Sheth, Susan J Brown

The paper presents tools to improve genome assembly using consensus maps and super scaffolding, significantly increasing contiguity in a Tribolium castaneum genome.

bioRxiv · Aug 18, 2015Bioinformatics

Genomics via Optical Mapping (I): 0-1 Laws for Mapping with Single Molecules

Thomas Anantharaman, Bud Mishra

The paper demonstrates that increasing the number of imaged single molecules in optical mapping data leads to a sharp transition from 0 to 1 probability of successful map computation.

bioRxiv · Nov 22, 2013 · PreprintGenomics