Li Guo

PlantOmicsGWAS provides a reproducible framework for plant GWAS and genomic prediction, supporting both linear and pan-genome references to improve analysis of structural variations.

This paper presents haplotype-resolved T2T gap-free genomes of Cabernet Sauvignon, revealing inversion events not seen in other V. vinifera genomes.

This study presents a gap-free, phased genome assembly of tobacco, revealing subgenomic diversification of centromeres after allopolyploidization.

This study uses pan-metagenomics to analyze the grapevine phyllosphere microbiome, revealing its structure, diversity, and functional roles in downy mildew resistance.

The paper assembles and annotates haplotype-resolved genomes of grapevines to uncover genetic diversity and disease resistance mechanisms, identifying structural variants linked to downy mildew resistance.

The paper presents a complete T2T genome assembly for lettuce, revealing centromere structure and aiding in identifying disease resistance genes.

The paper presents a chromosome-level genome of wampee and identifies genes associated with fruit sugar-acid metabolism through population genomics and GWAS.

CAT Bridge identifies gene-metabolite associations using time-series multi-omics data and benchmarks statistical methods for longitudinal analysis.

This paper presents a near-complete genome sequence of einkorn wheat, revealing insights into its evolutionary history and adaptive gene expansions.

This paper presents a chromosome-level genome assembly for longan and identifies genetic factors influencing fruit quality traits through population genomics and GWAS.

Mako detects complex structural variants using a graph-based pattern growth approach, achieving 70% validation rate on real data and identifying 15 CSV types including two novel ones.

This study characterizes structural variants in Fusarium graminearum, showing their prevalence and functional relevance in pangenome evolution and fungal virulence.

The paper improves the genome assembly of Fusarium oxysporum strain Fo5176 and expands its use as a model system for studying plant-fungal interactions.

The paper presents a chromosome-level genome assembly of Fusarium oxysporum strain Fo47, highlighting its unique genomic features and potential for studying plant interactions.

MSIsensor-pro detects microsatellite instability without matched normal samples, outperforming existing methods in accuracy and speed.

This study identifies a large number of structural variants in human genomes using multiple sequencing technologies and presents them as a gold standard for future studies.

This study compares kinomes of 12 Fusarium oxysporum isolates and seven ascomycete genomes, identifying kinase expansions linked to environmental sensing and host specificity.