Ting-Jan Cho

The SHR/Akr Y chromosome reveals repeated turnover of the rat pseudoautosomal region

The paper sequences the rat Y chromosome and reveals a short pseudoautosomal region with high recombination rate and unique evolutionary features.

SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

SHIMS 3.0 uses ultra-long nanopore reads to improve assembly of structurally complex genomic regions with high accuracy and reduced manual effort.

Large palindromes on the primate X Chromosome are preserved by natural selection

The paper identifies 26 conserved palindromes on the human X Chromosome and finds that natural selection preserves protein-coding gene families within them, while spacers show structural instability.

Locating a transgene integration site by nanopore sequencing

This paper uses nanopore sequencing to identify the integration site of a transgene in mouse genomes and provides additional insights into transgene structure and contamination.

Cost-effective, high-throughput, single-haplotype iterative mapping and sequencing for complex genomic structures

The paper introduces SHIMS 2.0, a cost-effective and high-throughput method for generating high-quality reference sequences from complex genomic regions.