Author

Trieu Nguyen

Albert Einstein College of MedicinePrimary ORCID profile (0000-0001-5647-1301 · 15 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Trieu NguyeniD15 papers · Stanford Medicine

Biology Disciplines

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Biophysics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:graph neural network· 1 Organism:human· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Aditi HegdeiD· 1 shared Aleksandra M. KarolakiD· 1 shared Aruna N. C. ShekhariD· 1 shared Chie YanaseiD· 1 shared Dominika KwasniakiD· 1 shared Jessica JeejaniD· 1 shared Joyeeta ChakrabortyiD· 1 shared Keisuke ItoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenetics

Aditi HegdeORCID

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2 papers

Recent·Most cited

Systematic functional dissection of germline noncoding risk variants impacting clonal hematopoiesis

Trieu Nguyen, Jessica Jeejan, Takeshi Iwasaki, Susan Kales, Joyeeta Chakraborty, Chie Yanase, Aruna N. C. Shekhar, Dominika Kwasniak, Aditi Hegde, Richard A. Voit, Kristy R. Stengel, Keisuke Ito, Ryan Tewhey, Satish Kumar Nandakumar

The paper identifies non-coding variants associated with clonal hematopoiesis and demonstrates their regulatory impact on gene expression and clonal expansion.

bioRxiv · Jan 23, 2026 · PreprintGenetics

Transformer Graph Variational Autoencoder for Generative Molecular Design

Trieu Nguyen, Aleksandra M. Karolak

This paper introduces TGVAE, a Transformer Graph Variational Autoencoder that generates diverse and chemically valid molecules by using molecular graphs instead of SMILES strings, outperforming existing methods.

Biophysical Journal · Jan 30, 2025Peer-reviewedBiophysics