Author

Tuan Nguyen

Icahn School of Medicine at Mount Sinai

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 3 Bioengineering· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Approach:large language model· 2 Assay:metabolomics· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:clinical cohort / trial· 1 Research Focus:clustering· 1

Frequent Co-Authors

Dinesh Kumar BarupaliD· 2 shared Abigail M HolderiD· 1 shared Anh Nguyen Tuan· 1 shared Aurora Sheridan· 1 shared Caleb Darden· 1 shared David M. LovingeriD· 1 shared Enos Dk KakwambiiD· 1 shared Henry L. PuhliD· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Dinesh Kumar BarupalORCID

Author profile →

5 papers

Recent·Most cited

In-silico Tandem Mass Spectral Libraries for the Blood Exposome and Metabolomics Workbench Databases: Application of Gemini Large Language Model

Tuan Nguyen, Dinesh Kumar Barupal

The paper generates in-silico mass spectral libraries for human metabolomics using the Gemini large language model, achieving 55% accuracy compared to NIST 23.

bioRxiv · Oct 25, 2026 · PreprintBioinformatics

Principal Genes: A PCA-based approach to highly variable genes selection for scRNA-Seq analysis

Enos Dk Kakwambi, Tuan Nguyen, Suryaveer Kapoor, Marmar R. Moussa

This paper introduces a PCA-based method for selecting highly variable genes in scRNA-Seq data, showing it is comparable or better than dispersion-based methods and faster.

bioRxiv · Aug 17, 2026 · PreprintBioinformatics

Split intein vectors permit oversize FLIM-FRET biosensor neuronal expression

Jeong Oen Lee, Henry L. Puhl, Abigail M Holder, Aurora Sheridan, Caleb Darden, Muhammad Shah, William Dunne, Tuan Nguyen, Kirk Hines, Shana M. Augustin, Youngchan Kim, Steven S. Vogel, David M. Lovinger

The paper develops a split intein strategy to deliver oversized FLIM-FRET biosensors for neuronal cAMP monitoring in behaving mice.

bioRxiv · Jun 5, 2026 · PreprintBioengineering

Simulating Tandem Mass Spectra for Small Molecules using a General-Purpose Large-Language Model

Tuan Nguyen, Dinesh Kumar Barupal

The paper uses a large-language model to simulate tandem mass spectra for small molecules, bypassing the need for domain-specific training.

bioRxiv · Nov 10, 2025 · PreprintBioinformatics

FIRST REPORT OF CANDIDA AURIS IN VIETNAM.

Phu Truong-Thien, Anh Nguyen Tuan, Tuan Nguyen

This paper reports the first antifungal susceptibility testing of Candida auris in Vietnam using the Sensititre YeastOne system, showing resistance patterns to three antifungal classes.

bioRxiv · May 12, 2025 · PreprintMicrobiology