Author

Tushar Agashe

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ana Almonte-LoyaiD· 1 shared Aurora Rynda· 1 shared Bhargavi DameracharlaiD· 1 shared Brittany MoseriD· 1 shared Chioma J. MadubataiD· 1 shared Daniel SchreyeriD· 1 shared Devika Torvi· 1 shared Edwin HuangiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperImmunology

Ana Almonte-LoyaORCID

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2 papers

Recent·Most cited

Advancing CD38 from a marker of disease activity to an active regulator of interferon responses in juvenile dermatomyositis

Brittany Moser, Chioma J. Madubata, Marissa Y. Chou, Madison L. Lotstein, Zilan Zheng, Tushar Agashe, Ana Almonte-Loya, Taylor N. LaFlam, Aurora Rynda, Jennifer P. Fox, Jessica L. Turnier, Johann Gudjonsson, Joanne Michelle Kahlenberg, Gabriela K. Fragiadakis, Kanneboyina Nagaraju, , Jessica A Neely

This study identifies CD38 as a regulator of interferon responses in juvenile dermatomyositis and suggests its inhibition as a potential therapeutic strategy.

bioRxiv · Oct 20, 2026 · PreprintImmunology

AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes

Jens Luebeck, Edwin Huang, Forrest Kim, Ted Liefeld, Bhargavi Dameracharla, Rohil Ahuja, Daniel Schreyer, Gino Prasad, Michał Adamaszek, Rishaan Kenkre, Tushar Agashe, Devika Torvi, Thorin T. Tabor, Mădălina Giurgiu, So Yeon Kim, , Vineet Bafna

AmpliconSuite identifies focal amplifications in cancer genomes, showing ecDNA has higher copy numbers and stronger oncogene enrichment compared to other amplification types.

bioRxiv · May 6, 2024 · PreprintBioinformatics