Author

Xi Li

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Bin Yu· 1 shared Jie Zeng· 1 shared Jingjing Li· 1 shared Jingyuan HuiD· 1 shared Kun Wan· 1 shared Rong MaiD· 1 shared Wenfang Lin· 1 shared Xin Yu· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Bin Yu

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2 papers

Recent·Most cited

Uncovering smooth structures in single-cell data with PCS-guided neighbor embeddings

Rong Ma, Xi Li, Jingyuan Hu, Bin Yu

The paper introduces NESS, a method to improve neighbor embeddings in single-cell data by leveraging stability, enabling better inference of smooth biological structures and cell-state transitions.

bioRxiv · Jun 27, 2025 · PreprintBioinformatics

Low nutrient levels reduce the fitness cost of MexCD-OprJ efflux pump overexpression in ciprofloxacin-resistant Pseudomonas aeruginosa

Wenfang Lin, Kun Wan, Jie Zeng, Jingjing Li, Xi Li, Xin Yu

This study shows that low nutrient levels reduce the fitness cost of ciprofloxacin resistance in Pseudomonas aeruginosa due to decreased efflux pump expression and altered gene regulation.

bioRxiv · Apr 10, 2018 · PreprintMicrobiology