Author

Yanhong Nie

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Jieyi CheniD· 2 shared Kaiyue MaiD· 2 shared Lianting FuiD· 2 shared Mario VenturaiD· 2 shared Qiang SuniD· 2 shared Xiangyu YangiD· 2 shared Yafei MaoiD· 2 shared Adam M. PhillippyiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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2 shared papersGenomics

Jieyi ChenORCID

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2 papers

Recent·Most cited

A complete and near-perfect rhesus macaque reference genome: lessons from subtelomeric repeats and sequencing bias

Shilong Zhang, Ning Xu, Yong Lu, Yanhong Nie, Zhengtong Li, Luciana de Gennaro, Alessandra La Torraca, Lianting Fu, Zhendong Zhang, Jieyi Chen, Kaiyue Ma, Xiangyu Yang, Juan Zhang, Matthew T. Schmitz, Francesca Antonacci, , Yafei Mao

The paper presents a high-accuracy T2T rhesus macaque genome assembly, identifies subtelomeric repeats as a challenge, and reveals new genomic features and functional elements in these regions.

Cell · Aug 1, 2026Peer-reviewedGenomics

Incomplete lineage sorting of segmental duplications defines the human chromosome 2 fusion site early during African great ape speciation

Zikun Yang, Lu Zhang, Xinrui Jiang, Xiangyu Yang, Kaiyue Ma, DongAhn Yoo, Yong‐Jie Lu, Shilong Zhang, Jieyi Chen, Yanhong Nie, Xinyan Bian, Junmin Han, Lianting Fu, Juan Zhang, Mario Ventura, , Yafei Mao

The paper identifies three ancient segmental duplications at the human chromosome 2 fusion site, showing their differential distribution due to incomplete lineage sorting and their regulatory impact on gene expression.

Cell Genomics · Dec 2, 2025Peer-reviewedEvolutionary Biology