Author

Yuli Gao

Tongji University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Kejing DongiD· 3 shared Qi LiuiD· 3 shared Yicheng GaoiD· 3 shared Siqi WuiD· 2 shared Baoxue GeiD· 1 shared Cheng PengiD· 1 shared Chenyue ShiiD· 1 shared Chi ZhouiD· 1 shared

Activity by Year

2023-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersBioinformatics

Kejing DongORCID

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Author profile →

4 papers

Recent·Most cited

Maleic acid adjuvates BCG to induce CD4+CD8+ T cells and sterilize tuberculosis

Chenyue Shi, Hongyu Cheng, Xiaoli Feng, Xinyu Cao, Hongjie Liu, Qi Liu, Lu Zhang, Yuanna Cheng, Cheng Peng, Jinya Zhang, Qiaojiang Yang, Kejing Dong, Yuli Gao, Xinyi Hu, Yudan Liu, , Baoxue Ge

This study shows that maleic acid enhances BCG vaccination to induce CD4+CD8+ T cells that sterilize Mtb infection in mice.

bioRxiv · Sep 21, 2026 · PreprintMicrobiology

Reply to: The pitfalls of negative data bias for the T-cell epitope specificity challenge

Yicheng Gao, Yuli Gao, Kejing Dong, Siqi Wu, Qi Liu

The paper clarifies that improper negative data sampling strategies can bias TCR-antigen prediction models like PanPep and advocates for consistent comparison methods.

Nature Machine Intelligence · Oct 5, 2023Peer-reviewedBioinformatics

Unified cross-modality integration and analysis of T-cell receptors and T-cell transcriptomes

Yicheng Gao, Kejing Dong, Yuli Gao, Xuan Jin, Qi Liu

UniTCR integrates T-cell receptor and transcriptome data using contrastive learning for diverse immunology tasks, showing superior performance on paired datasets.

bioRxiv · Aug 19, 2023 · PreprintBioinformatics

Neo-epitope identification by weakly-supervised peptide-TCR binding prediction

Yuli Gao, Yicheng Gao, Wannian Li, Siqi Wu, Feiyang Xing, Chi Zhou, Shaliu Fu, Guohui Chuai, Qinchang Chen, He Zhang, Qi Liu

This study introduces TCRBagger, a weakly-supervised framework for peptide-TCR binding prediction to improve neo-epitope identification in tumor immunotherapy.

bioRxiv · Aug 2, 2023 · PreprintBioinformatics