Author

Zhenyu Xu

Hangzhou Institute of Medicine, Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Bowen LiiD· 1 shared Chengyun ZhangiD· 1 shared Chulin ShaiD· 1 shared Hongliang DuaniD· 1 shared Lie‐Feng MaiD· 1 shared Lujing CaoiD· 1 shared Silong ZhaiiD· 1 shared Tianfeng ShangiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Bowen LiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

CLM-X: A multimodal single-cell foundation model with flexible multi-way Transformer for unified scRNA-seq and scATAC-seq analysis

Bowen Li, Ziqiang Liu, Zhen Wang, Zhenyu Xu, Yantao Li, Chulin Sha, Xiaodong Li

CLM-X is a multimodal single-cell foundation model that outperforms existing methods in cross-modal translation and perturbation prediction across scRNA-seq and scATAC-seq datasets.

bioRxiv · Feb 18, 2026 · PreprintGenomics

Multi_CycGT: a DL-based multimodal model for membrane permeability prediction of cyclic peptides

Lujing Cao, Zhenyu Xu, Tianfeng Shang, Chengyun Zhang, Xinyi Wu, Yejian Wu, Silong Zhai, Lie‐Feng Ma, Hongliang Duan

This paper introduces Multi_CycGT, a deep learning model for predicting cyclic peptide membrane permeability, achieving high accuracy and AUC on a benchmark dataset.

bioRxiv · Jun 20, 2023 · PreprintBioinformatics