Author

Zhiqi Ma

Westlake University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Approach:diffusion model· 1 Research Focus:drug response / drug discovery· 1 Assay:long-read sequencing· 1 Research Focus:sequence-to-function modeling· 1 Approach:statistical model· 1

Frequent Co-Authors

Yefeng ZhengiD· 2 shared Jiale Zhou· 1 shared Rubo WangiD· 1 shared Zhijian WuiD· 1 shared Zhipeng Deng· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Yefeng ZhengORCID

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2 papers

Recent·Most cited

RiboCouple links RNA backbone generation to sequence design through a learned interaction topology

Zhiqi Ma, Yefeng Zheng

The paper introduces RiboCouple, a method that links RNA backbone geometry to sequence design using learned interaction topologies, improving refolding validity in RNA structure prediction.

bioRxiv · Oct 25, 2026 · PreprintBioinformatics

siProGenA: Generative siRNA Candidate Construction via Position Proposal and Guide Generation

Zhiqi Ma, Jiale Zhou, Rubo Wang, Zhipeng Deng, Zhijian Wu, Yefeng Zheng

siProGenA generates siRNA candidates by proposing positions and generating guide sequences, achieving high Hit@1 and Hit@5 scores in controlled evaluations.

bioRxiv · Sep 4, 2026 · PreprintBioinformatics