Author

Atefeh Bagheri

Cleveland State UniversityORCID 0000-0001-5274-7227Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1

Frequent Co-Authors

Peng JiangiD· 3 shared Chandrasekhar R. KothapalliiD· 1 shared Colin N. DeweyiD· 1 shared Dennis CleggiD· 1 shared Elif G. ErtugraliD· 1 shared Huishi TohiD· 1 shared Igor Radzikh· 1 shared James Alexander ThomsoniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Peng JiangORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsBiomedical informatics.Peer-reviewedAug 7, 2025

Distinct Nuclear and Cytoplasmic Transcriptomic Signatures Reveal Transcription Alone Is Insufficient to Determine Glucose-Induced Transcriptomic Dynamics

Atefeh Bagheri, Jinsil Kim, Peng Jiang

The paper investigates glucose-induced transcriptomic changes in nuclear and cytoplasmic compartments across cell lines, finding that transcription alone cannot explain the observed dynamics.

DOI 10.55092/bi20250004

humanbulk RNA-seq

𝕏 PostBluesky

BioengineeringJournal of Biological EngineeringPeer-reviewedOct 29, 2024

Integrative Analysis of Gene Expression, Protein Abundance, and Metabolomic Profiling Elucidates Complex Relationships in Chronic Hyperglycemia-Induced Changes in Human Aortic Smooth Muscle Cells

Smriti Bohara, Atefeh Bagheri, Elif G. Ertugral…·Chandrasekhar R. Kothapalli

This study examines how chronic hyperglycemia affects human aortic smooth muscle cells, revealing changes in gene expression, protein levels, and metabolic profiles linked to cardiovascular disease.

9 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsComputational Biology and ChemistryPeer-reviewedNov 24, 2022

A Nile Grass Rat Transcriptomic Landscape Across 22 Organs By Ultra-deep Sequencing and Comparative RNA-seq pipeline (CRSP)

Huishi Toh, Atefeh Bagheri, Colin N. Dewey…·Peng Jiang

The paper develops CRSP, a pipeline for RNA-seq analysis in species without a sequenced genome or reference transcripts, and applies it to generate a comprehensive Nile grass rat transcriptomic atlas.

4 citations

ratbulk RNA-seq

𝕏 PostBluesky