Author

Deepali Jain

All India Institute of Medical SciencesORCID 0000-0001-5315-9814Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ishaan GuptaiD· 3 shared Juwayria· 2 shared Prabhat Singh MalikiD· 2 shared Animesh RayiD· 1 shared Anjan TrikhaiD· 1 shared Anshul BudhrajaiD· 1 shared Anubhav Basu· 1 shared Arulselvi SubramanianiD· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBioinformatics

Ishaan GuptaORCID

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3 papers

Recent·Most cited

Bioinformaticsnpj Systems Biology and ApplicationsPeer-reviewedNov 30, 2024

Microarray Integrated Spatial Transcriptomics (MIST) for Affordable, Robust, and Comprehensive Digital Pathology

Juwayria, Priyansh Shrivastava, Kaustar Yadav…·Ishaan Gupta

The paper introduces MIST, a cost-effective spatial transcriptomics method combining tissue microarrays with Visium, and presents AnnotateMap for analyzing multiple ROIs.

16 citations

spatial transcriptomicsexperimental assay

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BioinformaticsbioRxivPreprintSep 25, 2022

Spurious off-target signals from potential lncRNAs by 10X Visium probes

P. Prakrithi, Juwayria, Deepali Jain…·Ishaan Gupta

The paper identifies spurious off-target signals from lncRNAs in 10X Visium FFPE spatial transcriptomics data and recommends excluding affected genes.

DOI 10.1101/2022.09.25.509336

humanspatial transcriptomics

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Molecular BiologyDisease Models & MechanismsPeer-reviewedApr 19, 2022

Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality

Anshul Budhraja, Anubhav Basu, Atish Gheware…·Deepali Jain

This study identifies two distinct molecular signatures in postmortem lung tissue from severe COVID-19 patients, associated with different pathological mechanisms and microbiome profiles.

25 citations

humanbulk RNA-seq

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