Author

Paweł Rubach

SGH Warsaw School of EconomicsORCID 0000-0001-5487-609XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:machine learning (classical)· 2 Organism:human· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Agata P. PerlinskaiD· 2 shared Joanna Ida SulkowskaiD· 2 shared Bartosz A. GreniD· 1 shared Dawid Uchal· 1 shared Denisa ŠrámkováiD· 1 shared Eva KlimentováiD· 1 shared Maciej SikoraiD· 1 shared Mai Lan NguyeniD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Agata P. PerlinskaORCID

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2 papers

Recent·Most cited

BioinformaticsProtein SciencePeer-reviewedJun 18, 2024

Knot or Not? Sequence-Based Identification of Knotted Proteins With Machine Learning

Maciej Sikora, Eva Klimentová, Dawid Uchal…·Joanna Ida Sulkowska

This study uses machine learning to predict protein knotting from amino acid sequences, achieving 98.5% accuracy using AlphaFold predictions and UniProt data.

13 citations

protein sequencemachine learning (classical)

𝕏 PostBluesky

Molecular BiologybioRxivPreprintDec 30, 2021

New 63 knot and other knots in human proteome from AlphaFold predictions

Agata P. Perlinska, Wanda H. Niemyska, Bartosz A. Gren…·Joanna Ida Sulkowska

The paper analyzes AlphaFold-predicted human protein structures to identify knots, finding 65 robustly knotted proteins, including a new complex knot type.

3 citations

humanprotein structure

𝕏 PostBluesky