Author

Philipp Goymann

Max Planck Institute for Heart and Lung ResearchORCID 0000-0001-5640-9356Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:software / tool· 2 Assay:ATAC-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Carsten Tobias KuenneiD· 3 shared Mario LoosoiD· 3 shared Hendrik SchultheisiD· 2 shared Jasmin WalteriD· 2 shared Mette Skou BentseniD· 2 shared René WiegandtiD· 2 shared Anastasiia PetrovaiD· 1 shared Angeline UsanayoiD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersBioinformatics

Carsten Tobias KuenneORCID

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Author profile →

3 papers

Recent·Most cited

BioinformaticsiSciencePeer-reviewedJun 29, 2026

SC-Framework: A robust and FAIR semi-interactive environment for single-cell resolution datasets

Hendrik Schultheis, Jan Detleffsen, René Wiegandt…·Mario Looso

SC-Framework provides a unified, containerized environment for single-cell data analysis to improve reproducibility and scalability.

3 citationstop 5%

scRNA-seqexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 4, 2026

FRED: a universal tool to generate FAIR metadata for omics experiments

Jasmin Walter, Carsten Tobias Kuenne, Noah Knoppik…·Mario Looso

FRED generates FAIR-compliant metadata for omics experiments, enabling structured data management and interoperability.

DOI 10.64898/2026.02.03.703529

database / resourcesoftware / tool

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BioinformaticsNature CommunicationsPeer-reviewedAug 26, 2020

Beyond accessibility: ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation

Mette Skou Bentsen, Philipp Goymann, Hendrik Schultheis…·Mario Looso

TOBIAS enables genome-wide analysis of TF binding dynamics using ATAC-seq data, revealing complex TF interactions during zygotic genome activation in humans and mice.

697 citationstop 1%

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