Author

James J. Furniss

Roslin InstituteORCID 0000-0001-5643-2070Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Assay:scRNA-seq· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Alexandra FloreaiD· 2 shared Ambre F. ChapuisiD· 2 shared Tim P. BeaniD· 2 shared Adriana Magalhães Santos AndreseniD· 1 shared Clémence FrasliniD· 1 shared Daniel J. MacqueeniD· 1 shared Diego RobledoiD· 1 shared Johanna Hol FosseiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Alexandra FloreaORCID

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Author profile →

3 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 18, 2026

A Single-Nucleus Transcriptomic Atlas Reveals Cell-Type-Specific Responses to OsHV-1 Infection in the Pacific Oyster

Pooran Singh Dewari, Tim W. Regan, Ambre F. Chapuis…·Tim P. Bean

The paper presents a single-nucleus transcriptomic atlas of Pacific oysters during OsHV-1 infection, identifying cell-type-specific responses and potential viral entry sites.

DOI 10.64898/2026.05.15.723513

bacteria (other)scRNA-seq

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GenomicsPLoS ONEPeer-reviewedApr 27, 2026

Transcriptomic study of WSSV infection in Litopenaeus vannamei lymphoid organ via single nuclei RNA sequencing

Alexandra Florea, Nicholas M. Wade, Sarah J. Salisbury…·Tim P. Bean

The paper uses single nuclei RNA sequencing to study WSSV infection in shrimp lymphoid organ and identifies potential CRISPR targets for disease resistance.

1 citation

scRNA-seqexperimental assay

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ImmunologyFish & Shellfish ImmunologyPeer-reviewedOct 10, 2025

Virus-inclusive single-nucleus RNA sequencing reveals two distinct endothelial response patterns in infectious salmon anaemia.

Adriana Magalhães Santos Andresen, Richard S. Taylor, James J. Furniss…·Johanna Hol Fosse

This study uses single-nucleus RNA sequencing to identify two distinct endothelial response patterns to ISAV infection in Atlantic salmon.

1 citation

mousescRNA-seq

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