Nathan C. Sheffield

Refgenie organizes and shares reference genome resources, making it easier to manage and retrieve genome analysis files.

The paper introduces AIList, a data structure for efficient genomic interval search, which outperforms existing methods in speed and memory usage.

BART predicts functional transcription factors regulating a gene set or associated with a genomic profile using existing ChIP-seq data.

This study maps DNA methylation changes in glioblastoma tumors over time and space, revealing heterogeneity and links to tumor microenvironment and patient survival.