Author

Florian Jupe

Monsanto (United States)ORCID 0000-0001-5741-4931Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:Arabidopsis· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Agathe JouetiD· 1 shared Agnieszka I. WitekiD· 1 shared Christa Lanz· 1 shared Detlef WeigeliD· 1 shared Felix BemmiD· 1 shared Hari S. KarkiiD· 1 shared Ingo HeiniD· 1 shared Jonathan D. G. JonesiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Agathe JouetORCID

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2 papers

Recent·Most cited

GenomicsMolecular Plant PathologyPeer-reviewedSep 15, 2020

Identification of Avramr1 from Phytophthora infestans using long read and cDNA pathogen-enrichment sequencing (PenSeq)

Xiao Lin, Tianqiao Song, Sebastian Fairhead…·Jonathan D. G. Jones

This study identifies the Avr gene Avramr1 from Phytophthora infestans using long-read and cDNA pathogen-enrichment sequencing, revealing key insights into effector evolution and polymorphism.

33 citations

long-read sequencingexperimental assay

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GenomicsNature CommunicationsPeer-reviewedFeb 1, 2018

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

Todd P. Michael, Florian Jupe, Felix Bemm…·Joseph R. Ecker

This paper presents a high-quality, contiguous genome assembly of Arabidopsis thaliana using a single Nanopore flow cell and consumer hardware, demonstrating cost-effectiveness and scalability.

286 citationstop 1%

Arabidopsiswhole-genome sequencing

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