Chris Bielow

The paper introduces mzQC, a standard for representing quality control metrics in mass spectrometry, enabling interoperable and machine-readable QC reporting.

pmultiqc generates metadata-aware QC reports for proteomics data using standardized metrics and integrates with existing workflows and cloud services.

The paper introduces CMAPLE, an optimized phylogenetic inference method, and integrates it into IQ-TREE 2 for improved pandemic-scale genomic analysis.

The paper presents open-source software libraries for processing mzQC data in Python, R, and Java, enabling QC analysis and integration in mass spectrometry workflows.

The paper uses a kinetic model of central carbon metabolism to predict metabolic reprogramming in liver cancer and validates findings through experiments.

The paper identifies and characterizes conserved small ORFs in multiple animal species, finding novel micropeptides with evidence of translation and functional potential.