Daniel J. Kliebenstein

The paper investigates the genetic basis of linalool resistance in Botrytis cinerea by analyzing phenotypic and genetic variation across isolates.

The paper uses co-proteomic analysis to study how Arabidopsis and Botrytis cinerea interact during infection, revealing metabolite-specific responses and a novel enzyme involved in detoxification.

The paper identifies a transcriptional repression module involving ATML1, GIR1, and TPL/TPR that regulates glucosinolate biosynthesis and giant cell formation in Arabidopsis thaliana sepals.

This study identifies general and host-specific transcriptional strategies in Botrytis cinerea that enable broad host range through metabolic and host-responsive gene modules.

This study uses co-transcriptomics to analyze host-pathogen interactions between Botrytis cinerea and two legumes, finding that both host and pathogen exhibit transcriptional plasticity leading to similar disease outcomes despite genetic divergence.

The paper maps immune responses of ten eudicot species to 72 Botrytis cinerea isolates, revealing conserved physiological outcomes and lineage-specific regulatory programs.

This study examines how spring wheat assimilates nitrogen and carbon under different nitrogen forms and CO2 levels, identifying genetic loci linked to biomass responses.

The paper catalogs structural and sequence variation in the pennycress pangenome, revealing contrasting evolutionary modes across genomic regions and highlighting the utility of pangenomic resources for crop development.

The paper investigates how shared cis-regulatory elements affect the function of the mitochondrial pyruvate dehydrogenase complex in Arabidopsis thaliana by mutating these elements in nine genes and analyzing the resulting phenotypes.

The paper investigates the evolution of glucosinolate structural modification enzymes in Brassicaceae, revealing convergent evolution and enantiomer-specific ecological impacts.

The paper compares PCA-based QTL mapping with individual trait hotspots in metabolomic and transcriptomic data from a recombinant inbred line, finding they identify different genomic regions and genetic architectures.

The paper identifies an efflux pump family in plant commensal bacteria that detoxifies host-specific glucosinolates, enabling host- and organ-specific colonization.

The paper identifies trans-regulatory loci influencing gene expression plasticity in Arabidopsis under salicylic acid treatment, showing most loci act in trans and are under-detected in GWAS.

The paper investigates the molecular evolution of three reproductive barrier loci in maize and related species, identifying gene duplication, selection, and epigenetic silencing mechanisms.

The paper sequenced twelve Camelina sativa genomes to study pangenomic variation in an allohexaploid species, finding minimal gene presence-absence variation but subgenome-specific gene content.

The paper investigates how Botrytis cinerea interacts with abaxial and adaxial leaf surfaces across multiple plant species, finding that abaxial surfaces are more susceptible and linking this to defense signaling and compound production.

This study identifies 4772 candidate genes across the Botrytis cinerea genome associated with virulence across eight eudicot hosts, revealing a polygenic strategy with small effect sizes and no bipartite genomic architecture.

This study shows that a transposable element insertion into a defense-related gene in Arabidopsis thaliana alters glucosinolate profiles and plant resistance to herbivory.

The paper examines how epigenomic divergence affects sequence polymorphism and the evolutionary fate of duplicate genes in Arabidopsis thaliana, finding that transcriptionally repressed genes accumulate more polymorphism and are more likely to pseudogenize.

The paper constructs a genome-scale transcriptional regulatory network for Arabidopsis metabolic genes, revealing distinct regulatory principles compared to microbes.

The paper profiles translatomes and chromatin accessibility in plant root cell types to reveal gene function innovation, conservation, and repurposing across species.

The paper analyzes co-transcriptome networks between Arabidopsis and B. cinerea to uncover virulence mechanisms and cross-kingdom interactions during infection.

The paper resequences 97 Botrytis cinerea isolates to study natural variation, finds increased genetic diversity and mitochondrial diversity, and identifies candidate genes for broad host range.

The paper uses digital imaging and genome-wide association mapping to identify genetic loci controlling novel lesion traits in Arabidopsis thaliana resistance to Botrytis cinerea.

The paper investigates how tomato domestication affects resistance to the generalist pathogen Botrytis cinerea and identifies pathogen genes linked to virulence against wild and domesticated tomatoes.