Author

Ehdieh Khaledian

La Jolla Institute for ImmunologyORCID 0000-0001-5767-4151Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:proteomics· 2 Research Focus:drug response / drug discovery· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Alessandro SetteiD· 1 shared Andrew J. MurphyiD· 1 shared Ankur DhanikiD· 1 shared Bjoern PetersiD· 1 shared Cecilia S. Lindestam ArlehamniD· 1 shared Daniel MarramaiD· 1 shared Darshit ShahiD· 1 shared Hannah BatteyiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperImmunology

Alessandro SetteORCID

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2 papers

Recent·Most cited

Predicting Immunogenic CD4+ T Cell Epitopes in Bacteria Using Antigen and Peptide Features

Daniel Marrama, Hannah Battey, Ehdieh Khaledian, Miriam Müller, Sudhasini Panda, Ricardo da Silva Antunes, Alessandro Sette, Cecilia S. Lindestam Arlehamn, Bjoern Peters

This paper develops a machine learning model that integrates peptide and antigen features to predict immunogenic CD4+ T cell epitopes in bacteria, achieving high accuracy across multiple bacterial species.

bioRxiv · Oct 25, 2024 · PreprintImmunology

Rigorous estimation of post-translational proteasomal splicing in the immunopeptidome

Kamil J. Cygan, Ehdieh Khaledian, Lili M. Blumenberg, Robert R. Salzler, Darshit Shah, William C. Olson, Lynn E. Macdonald, Andrew J. Murphy, Ankur Dhanik

This study estimates the extent of post-translational proteasomal splicing in the immunopeptidome and finds it is lower than previously reported.

bioRxiv · May 26, 2021 · PreprintBioinformatics