Author

Ankur Dhanik

Gritstone Oncology, Inc (United States)ORCID 0000-0001-9692-6980Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:proteomics· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexis Mantilla· 2 shared Andrew R. FergusoniD· 2 shared Karin U. JoossiD· 2 shared Matthew J. Davis· 2 shared Rita Zhou· 2 shared Adrienne C. GreeneiD· 1 shared Andrew J. MurphyiD· 1 shared Bukola Adeoye· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Alexis Mantilla

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 6, 2024

A novel HLA Class II presentation prediction algorithm deciphers immunogenic CD4 epitopes specific to KRAS G12C

Daniel Sprague, Meghan G. Hart, Joshua S. Klein…·Ankur Dhanik

EDGE-II predicts HLA class II epitopes and identifies immunogenic CD4+ T-cell responses specific to KRAS G12C mutations in cancer.

DOI 10.1101/2024.12.06.627073

humanproteomics

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GenomicsbioRxivPreprintDec 4, 2024

Comprehensive Longitudinal ctDNA Monitoring in Metastatic Cancer Patients Treated with an Individualized Neoantigen-directed Vaccine

Desiree Schenk, Matthew J. Davis, Rita Zhou…·Ankur Dhanik

This study monitors ctDNA in metastatic cancer patients receiving an individualized vaccine, showing the assay's sensitivity and insights into treatment response.

2 citations

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintMay 26, 2021

Rigorous estimation of post-translational proteasomal splicing in the immunopeptidome

Kamil J. Cygan, Ehdieh Khaledian, Lili M. Blumenberg…·Ankur Dhanik

This study estimates the extent of post-translational proteasomal splicing in the immunopeptidome and finds it is lower than previously reported.

7 citations

humanproteomics

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