Manu V. Tamminen

This study uses culture-free single-cell transcriptomics to analyze microeukaryotes under shading stress, revealing stable prokaryotic associations and functional changes in gene expression.

This paper demonstrates that the Nicking Loop targeted library preparation method works well with the DNBSEQ sequencing platform, matching performance of linear libraries on Illumina.

This paper evaluates ensilication technology for ambient DNA preservation, finding it maintains sequencing fidelity and reduces artifacts compared to frozen storage.

The paper shows antibiotic history shapes microbial response through eco-evolutionary and environmental feedbacks, creating a trade-off between resistance and recovery.

The paper introduces a single-cell method using polyacrylamide beads and split-pool barcoding to study microbial community heterogeneity and spatial interactions.

The paper introduces Nicking Loop, a method for converting DNA into circular single-stranded DNA for NGS, showing improved reproducibility, sensitivity, and compatibility with sequencing platforms.

Prider is an R package that efficiently designs primers and probes for complex DNA datasets by reducing redundancy and scaling linearly with input size.

nsearch is an open-source C++ library for processing and similarity searching of next-generation sequencing data, offering performance comparable to existing tools.