Author

Niina Smolander

University of TurkuORCID 0000-0003-4329-4785Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:DNA methylation· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Manu V. TammineniD· 3 shared Jasmin Talvitie· 1 shared Johannes CairnsiD· 1 shared Lutz BecksiD· 1 shared Meri LindqvistiD· 1 shared Olli PitkäneniD· 1 shared Rishi Das RoyiD· 1 shared Sanna PausioiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersEvolutionary Biology

Manu V. TamminenORCID

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3 papers

Recent·Most cited

Evolutionary BiologyThe ISME JournalPeer-reviewedJan 1, 2026

Eco-evolutionary dynamics and environmental detoxification jointly shape bacterial community response to antibiotic perturbation

Johannes Cairns, Niina Smolander, Sanna Pausio…·Teppo Hiltunen

The paper shows antibiotic history shapes microbial response through eco-evolutionary and environmental feedbacks, creating a trade-off between resistance and recovery.

DOI 10.1093/ismejo/wrag248

bacteria (other)metagenomics

𝕏 PostBluesky

MicrobiologybioRxivPreprintJun 26, 2025

Polyacrylamide bead split-pool method for microbial community analysis

Niina Smolander, Jasmin Talvitie, Manu V. Tamminen

The paper introduces a single-cell method using polyacrylamide beads and split-pool barcoding to study microbial community heterogeneity and spatial interactions.

DOI 10.1101/2025.06.26.661670

bacteria (other)metagenomics

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BioinformaticsBMC BioinformaticsPeer-reviewedMay 12, 2022

Prider - multiplexed primer design using linearly scaling approximation of set coverage

Niina Smolander, Timothy Ryan Julian, Manu V. Tamminen

Prider is an R package that efficiently designs primers and probes for complex DNA datasets by reducing redundancy and scaling linearly with input size.

7 citations

DNA methylationstatistical model

𝕏 PostBluesky