Author

Haridha Shivram

The University of Texas at AustinORCID 0000-0001-5897-8288Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Vishwanath R. IyeriD· 3 shared Steven V. Le· 2 shared Carrie M. RosenbergeriD· 1 shared Cynthia CheniD· 1 shared Donghong YaniD· 1 shared Gretchen L. SeimiD· 1 shared Hannah Little-Hooy· 1 shared Jing‐Qiong KangiD· 1 shared

Activity by Year

2018-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Vishwanath R. IyerORCID

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Author profile →

4 papers

Recent·Most cited

G-CSF and IL-6 drive myeloid dysregulation during severe viral infection

Kimberly K. Kajihara, Donghong Yan, Gretchen L. Seim, Hannah Little-Hooy, Jing‐Qiong Kang, Cynthia Chen, Marco Claudio De Simone, Tim Delemarre, Spyros Darmanis, Haridha Shivram, Rebecca N. Bauer, Carrie M. Rosenberger, Sharookh B. Kapadia, Min Jian Xu, Miguel Reyes

This study identifies G-CSF and IL-6 as drivers of myeloid dysregulation during severe viral infection, showing their role in emergency myelopoiesis and tissue injury.

Communications Biology · Jul 23, 2025Peer-reviewedImmunology

PRC2 activates interferon-stimulated genes indirectly by repressing miRNAs in glioblastoma

Haridha Shivram, Steven V. Le, Vishwanath R. Iyer

The paper shows PRC2 indirectly activates interferon-stimulated genes in glioblastoma by repressing miRNAs that target these genes.

PLoS ONE · Sep 12, 2019Peer-reviewedMolecular Biology

MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network

Haridha Shivram, Steven V. Le, Vishwanath R. Iyer

The paper identifies how miRNAs reinforce PRC2-mediated repression of target genes through feed-forward networks or independent mechanisms.

Genome Research · Feb 1, 2019Peer-reviewedGenomics

Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies

Haridha Shivram, Vishwanath R. Iyer

The paper identifies and removes sequencing artifacts caused by RT mispriming in RNA-seq data using a computational pipeline and proposes an experimental solution.

RNA · Jun 27, 2018Peer-reviewedGenomics