Author

Albane Ruaud

Max Planck Institute for Developmental BiologyORCID 0000-0001-5920-1710Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell-cell communication· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Nicholas D. YoungblutiD· 2 shared Ruth E. LeyiD· 2 shared Angela C. PooleiD· 1 shared Aurélien RichaudiD· 1 shared Cigdem AlkaniD· 1 shared Daniel H. HusoniD· 1 shared Gaotian ZhangiD· 1 shared Gautier Brésard· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Nicholas D. YoungblutORCID

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintFeb 10, 2024

Natural variation in infection specificityof Caenorhabditis briggsae isolates by two RNA viruses

Cigdem Alkan, Gautier Brésard, Lise Frézal…·Marie‐Anne Félix

The paper investigates natural variation in C. briggsae isolates' resistance to two RNA viruses, identifying genomic regions associated with viral resistance.

DOI 10.1101/2024.02.10.579610

C. elegansstatistical model

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BioinformaticsPLoS Computational BiologyPeer-reviewedDec 14, 2022

Interpreting tree ensemble machine learning models with endoR

Albane Ruaud, Niklas Pfister, Ruth E. Ley, Nicholas D. Youngblut

endoR interprets tree ensemble models in microbiome data by extracting feature importance and interactions, confirming known associations and revealing new microbial network insights.

9 citations

humanmetagenomics

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GeneticsCell Host & MicrobePeer-reviewedApr 1, 2019

Human salivary amylase gene copy number impacts oral and gut microbiomes

Angela C. Poole, Julia K. Goodrich, Nicholas D. Youngblut…·Ruth E. Ley

The paper shows that human AMY1 gene copy number affects oral and gut microbiome composition and function, with low-AMY1 associated with enhanced complex carbohydrate breakdown and high-AMY1 linked to resistant starch fermentation and higher adiposity.

140 citationstop 2%

humanbulk RNA-seq

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