Author

Niklas Pfister

University of CopenhagenORCID 0000-0001-6203-9777Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Albane RuaudiD· 1 shared Casey J. Bohl· 1 shared Collin Y. EwaldiD· 1 shared Cyril StatzeriD· 1 shared Evan G. WilliamsiD· 1 shared Jack Haverty· 1 shared Jelena ČuklinaiD· 1 shared Jesse F. Ingels· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperBioinformatics

Albane RuaudORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedDec 14, 2022

Interpreting tree ensemble machine learning models with endoR

Albane Ruaud, Niklas Pfister, Ruth E. Ley, Nicholas D. Youngblut

endoR interprets tree ensemble models in microbiome data by extracting feature importance and interactions, confirming known associations and revealing new microbial network insights.

9 citations

humanmetagenomics

𝕏 PostBluesky

Systems BiologyCell SystemsPeer-reviewedOct 19, 2021

Multi-Omic Profiling of the Liver Across Diets and Age in a Diverse Mouse Population

Evan G. Williams, Niklas Pfister, Suheeta Roy…·Ruedi H. Aebersold

The paper uses multi-omics data from mice to identify gene-environment-age interactions and causal molecular networks linked to longevity.

55 citations

mousebulk RNA-seq

𝕏 PostBluesky