Jean M. Davidson

The paper uses transcriptomics to study connectivity and viability selection in a marine species, finding high self-recruitment in the historical range and increasing self-recruitment with age in the expanded range.

refMLST provides a reference-based multilocus sequence typing method for bacterial outbreak investigation, offering improved resolution and scalability compared to existing approaches.

This paper uses large language models and ontology-driven strategies to improve link prediction and entity resolution in knowledge graphs for chronic lower back pain research.

This study optimizes and validates a DNA extraction protocol for Kellet's whelk, enabling high-quality genomic sequencing for non-model marine organisms.

This study assembles and annotates the genome of Botrylloides violaceus using hybrid sequencing and performs comparative genomic analysis to identify conserved and divergent gene families.

ENCODE's containerised Workflow Description Language pipelines for ChIP-seq, ATAC-seq, DNase-seq, RNA-seq variants, Hi-C and bisulfite sequencing run on cloud or local clusters, with documented compute costs and provenance.

The paper systematically maps chromatin state landscapes during mouse development by profiling histone modifications across 72 tissue-stages, identifying dynamic enhancers and transcriptional regulators.

This study evaluates the use of whole blood transcriptome sequencing for diagnosing rare diseases, finding an 8.5% diagnostic rate across 56 undiagnosed cases.