Author

David M. Whiley

Queensland HealthORCID 0000-0001-5969-3161Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:genome assembly· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Scott A. BeatsoniD· 2 shared Adam IrwiniD· 1 shared Anna Sze TaiiD· 1 shared Brian M. FordeiD· 1 shared Bryan A. WeeiD· 1 shared David L. PatersoniD· 1 shared Iain L. LamontiD· 1 shared Kay A. RamsayiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Scott A. BeatsonORCID

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2 papers

Recent·Most cited

BioinformaticsBMC GenomicsPeer-reviewedJun 25, 2021

MicroPIPE: An end-to-end solution for high-quality complete bacterial genome construction

Valentine Murigneux, Leah Wendy Roberts, Brian M. Forde…·Scott A. Beatson

MicroPIPE constructs high-quality bacterial genomes using ONT and Illumina sequencing with an automated pipeline.

49 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedAug 30, 2018

Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Bryan A. Wee, Anna Sze Tai, Laura J. Sherrard…·Scott A. Beatson

The paper uses whole genome sequencing to show that M3L7, a multidrug-resistant sub-type of AUST-02, emerged as a shared strain among CF patients in a single centre, with evidence of both continuous infection and cross-infection.

25 citations

humanwhole-genome sequencing

𝕏 PostBluesky