Author

Simon Suppinger

University of BaselORCID 0000-0001-6426-402XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Developmental Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:development & morphogenesis· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Prisca LiberaliiD· 3 shared Franziska MoosiD· 2 shared Koen C. OostiD· 2 shared A. Boni· 1 shared Alessandra Ferrari· 1 shared Ankit SinhaiD· 1 shared Brigitta StockingeriD· 1 shared C. Rémy· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersSystems Biology

Prisca LiberaliORCID

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3 papers

Recent·Most cited

Systems BiologybioRxivPreprintAug 26, 2026

In the same cell, the proteome defines cellular state and the transcriptome marks transitions

Marvin Thielert, Enes Ugur, Maximilian Zwiebel…·Matthias Mann

The paper quantifies proteins and transcripts in the same cell, finding that the proteome defines stable cell states while the transcriptome reflects transitions.

2 citations

humanbulk RNA-seq

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Cell BiologyCellPeer-reviewedJun 30, 2026

Cell heterogeneity and fate bistability drive tissue patterning during intestinal regeneration

Cornelia Schwayer, Silvia Barbiero, David B. Brückner…·Prisca Liberali

The paper identifies how cell heterogeneity and YAP1 inactivation drive tissue patterning during intestinal regeneration through feedback mechanisms.

2 citationstop 3%

mouseexperimental assay

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Developmental BiologybioRxivPreprintSep 28, 2023

Open top multi sample dual view light sheet microscope for live imaging of large multicellular systems

Franziska Moos, Simon Suppinger, Gustavo de Medeiros…·Prisca Liberali

The paper introduces a dual-view light sheet microscope for live imaging of large multicellular systems at single-cell resolution and demonstrates its use on intestinal organoids and gastruloids.

1 citation

imagingexperimental assay

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